Documentation/Nightly/Modules/LandmarkRegistration - Revision history

Pieper at 23:16, 19 September 2014

2014-09-19T23:16:53Z

Pieper at 23:05, 19 September 2014

2014-09-19T23:05:30Z

Pieper at 23:04, 19 September 2014

2014-09-19T23:04:34Z

Pieper: Created page with '{{documentation/versioncheck}} {{documentation/{{documentation/version}}/module-header}}

← Older revision		Revision as of 23:16, 19 September 2014
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	{{documentation/{{documentation/version}}/module-section\|Panels and their use}}		{{documentation/{{documentation/version}}/module-section\|Panels and their use}}

		+	When you enter the module it will prompt for a fixed and moving volume. The is trigger the creation of a transformed volume that is a duplicate of the moving volume. Operations will take place on the "-transformed" volume.
		+
		+	* Parameters: these are the currently selected volumes and can be changed using the "Select Volumes To Register" button.
		+	* Visualization
		+	** Layout: by clicking these buttons you can change what orientations are shown by for each volume. The order will always be: Fixed first, Moving in the middle, Fixed plus transform blended last.
		+	** Display: select which of the volumes to display
		+	** RevealCursor: creates a 2x2 checkerboard of the bg and fb volumes of a slice view. Follows mouse. Note you can also put label maps in fg layer for inspection.
		+	** Controls all fixed/moving slice views
		+	*** Rock: goes back and forth between volumes
		+	*** Flicker: flashes between volumes
		+	** Zoom: synchronous inspection of all slice views
		+	* Landmarks
		+	** Add: puts you in landmark placement mode, and any click in fixed or moving will create a landmark in both volumes (corresponding to named fiducial list).
		+	** Landmarks are monitored so that any movement causes all other viewers to center on that landmark. Moving a landmark can trigger update of the active registration.
		+	* Registration
		+	** Registration Type: selects what is active
		+	*** Affine Registration: Supports three modes.
		+	**** Rigid: only rotate, translate
		+	**** Similarity: rigid + uniform scale
		+	**** Affine: rotate, translate, non-uniform scale, non-uniform shear
		+	*** ThinPlate Registration
		+	**** Hot Update: recalculate the nonlinear transform at every mouse movement.
		+	**** Export to Grid Transform: create a transform that can be saved/loaded and used with CLIs (thin plate can be used only within the Landmark Registration module).
		+
		+	Note that these transforms work with the transform visualization modes for real-time visualization.

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 Interactive registration and visualization.
-[[image:LandmarkRegistration-4.4.png|LandmarkRegistration Module]]
+[[image:LandmarkRegistration-4.4.png|LandmarkRegistration Module|thumb|500px|left]]
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 |Image:Logo-isomics.png|Isomics, Inc.
 |Image:Logo-namic.jpg|NA-MIC
-|Image:Logo-namic.jpg|NAC
+|Image:Logo-nac.jpg|NAC
 }}
 {{documentation/{{documentation/version}}/module-introduction-end}}
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 Interactive registration and visualization.
-[[image:Workspace 1 155.png|Sample Data Module]]
+[[image:LandmarkRegistration-4.4.png|LandmarkRegistration Module]]
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