Documentation/Nightly/Modules/FiberTractMeasurements - Revision history

Grundlett: Text replacement - "\bhttps:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+)\b " to "https://www.slicer.org/wiki/$1 "

2019-11-27T13:59:51Z

Text replacement - "\bhttps:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+)\b " to "https://www.slicer.org/wiki/$1 "

Lauren at 20:20, 6 July 2016

2016-07-06T20:20:29Z

Lauren at 20:03, 6 July 2016

2016-07-06T20:03:37Z

Lauren at 19:39, 6 July 2016

2016-07-06T19:39:02Z

Zhangfanmark at 20:26, 29 June 2016

2016-06-29T20:26:55Z

Lauren at 20:16, 29 June 2016

2016-06-29T20:16:27Z

Lauren at 20:15, 29 June 2016

2016-06-29T20:15:42Z

Lauren at 20:12, 29 June 2016

2016-06-29T20:12:29Z

Zhangfanmark: Blanked the page

2016-01-05T18:24:50Z

Blanked the page

Zhangfanmark: Created page with "{{documentation/versioncheck}} {{documentation/{{documentation/version}}/module-header}}

@@ Line 37: / Line 37: @@
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
 Links to tutorials that use this module
-* Slicer4 Fiber Bundle Selection and Scalar Measurements Tutorial: https://www.slicer.org/slicerWiki/index.php/Documentation/4.5/Training#Fiber_Bundle_Selection_and_Scalar_Measurements
+* Slicer4 Fiber Bundle Selection and Scalar Measurements Tutorial: https://www.slicer.org/wiki/Documentation/4.5/Training#Fiber_Bundle_Selection_and_Scalar_Measurements * Tractography selection and measurements in command line interface (CLI) mode: http://slicerdmri.github.io/docs/tutorials/CLITutorial.pdf
 * Usage from CLI with whitematteranalysis: https://github.com/SlicerDMRI/whitematteranalysis/wiki/Visualization-and-Analysis-of-Clustered-Tracts

@@ Line 31: / Line 31: @@
 Most frequently used for these scenarios:
-* Use Case 1: Compute measurements from all tractography files in a directory.
+* Use Case 1: Compute measurements from all tractography files in a directory (from command-line interface or Slicer).
-* Use Case 2: Compute measurements using a fiber tract hierarchy to select and combine tractography files in a directory (for example to define corpus callosum subregions).
+* Use Case 2: Compute measurements using a fiber tract hierarchy to select and combine tractography files in a directory (for example to define corpus callosum subregions). Use this from command-line interface (CLI) only.
 <!-- ---------------------------- -->

@@ Line 39: / Line 39: @@
 * Slicer4 Fiber Bundle Selection and Scalar Measurements Tutorial: https://www.slicer.org/slicerWiki/index.php/Documentation/4.5/Training#Fiber_Bundle_Selection_and_Scalar_Measurements
 * Tractography selection and measurements in command line interface (CLI) mode: http://slicerdmri.github.io/docs/tutorials/CLITutorial.pdf
 <!-- ---------------------------- -->

@@ Line 37: / Line 37: @@
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
 Links to tutorials that use this module
-* Slicer4 Fiber Bundle Selection and Scalar Measurements Tutorial :https://www.slicer.org/slicerWiki/index.php/Documentation/4.5/Training#Fiber_Bundle_Selection_and_Scalar_Measurements
+* Slicer4 Fiber Bundle Selection and Scalar Measurements Tutorial: https://www.slicer.org/slicerWiki/index.php/Documentation/4.5/Training#Fiber_Bundle_Selection_and_Scalar_Measurements
 <!-- ---------------------------- -->

@@ Line 18: / Line 18: @@
 |Image:Logo-splnew.jpg|Surgical Planning Laboratory
 |Image:NAC-logo.png|NAC
-|Image:DWIToDTIEstimation screenshot DWI.png|DWI
+|Image:Multple tracts.png|Multiple tracts from Corpus callosum (CC)
-|Image:DiffusionWeightedVolumeMasking Brain mask.png|Brain mask
+|Image:Csv measurements.png|Tensor measurements of the CC tracts
 }}
 {{documentation/{{documentation/version}}/module-introduction-end}}

← Older revision	Revision as of 20:12, 29 June 2016
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	+	{{documentation/{{documentation/version}}/module-introduction-row}}
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	+	{{documentation/{{documentation/version}}/module-acknowledgements}}
	+	Contact: <email>slicer-users@bwh.harvard.edu</email><br>
	+	Website: http://slicerdmri.github.io/
	+
	+	{{documentation/{{documentation/version}}/module-introduction-row}}
	+	{{documentation/{{documentation/version}}/module-introduction-logo-gallery
	+	\|Image:SlicerDMRIScreenshot.jpg\|SlicerDMRI
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	+	\|Image:NAC-logo.png\|NAC
	+	\|Image:DWIToDTIEstimation screenshot DWI.png\|DWI
	+	\|Image:DiffusionWeightedVolumeMasking Brain mask.png\|Brain mask
	+	}}
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	+	Most frequently used for these scenarios:
	+
	+	* Use Case 1: Create a brain mask from diffusion-weighted images (DWI). Use the brain mask to restrict tensor computation to the inside of the brain (remove noisy data outside the head). This makes a more attractive FA image.
	+	* Use Case 2: Create a brain mask from diffusion-weighted images (DWI). Use the brain mask for seeding tractography.
	+
	+	<!-- ---------------------------- -->
	+	{{documentation/{{documentation/version}}/module-section\|Tutorials}}
	+	Links to tutorials that use this module
	+	* Slicer4 Diffusion Tensor Imaging Tutorial: https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Training#Slicer4_Diffusion_Tensor_Imaging_Tutorial
	+
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	+	* DWIToDTIEstimation
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	+	{{documentation/{{documentation/version}}/module-section\|References}}
	+	* http://slicerdmri.github.io/
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	+	{{documentation/{{documentation/version}}/module-section\|Information for Developers}}
	+	* https://github.com/SlicerDMRI
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−	This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
−	~~Author: Alex Yarmarkovich, Fan Zhang, Lauren O'Donnell, SPL, LMI, PNL, Brigham and Women's Hospital, Harvard Medical School<br>~~
−	~~Contributor: Alex Yarmarkovich, Fan Zhang, Lauren O'Donnell <br>~~
−	~~Contact: Lauren O'Donnell <email> odonnell@bwh.harvard.edu </email><br>~~
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