Documentation/Nightly/Modules/FiberBundleLabelSelect - Revision history

Grundlett: Text replacement - "\bhttps:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+)\b " to "https://www.slicer.org/wiki/$1 "

2019-11-27T13:59:50Z

Text replacement - "\bhttps:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+)\b " to "https://www.slicer.org/wiki/$1 "

Inorton at 18:27, 10 April 2018

2018-04-10T18:27:34Z

Inorton at 17:32, 10 April 2018

2018-04-10T17:32:10Z

Lauren at 19:04, 6 July 2016

2016-07-06T19:04:49Z

Lauren at 18:39, 6 July 2016

2016-07-06T18:39:47Z

Zhangfanmark at 20:10, 29 June 2016

2016-06-29T20:10:17Z

Lauren at 20:02, 29 June 2016

2016-06-29T20:02:00Z

Lauren at 19:53, 29 June 2016

2016-06-29T19:53:45Z

Zhangfanmark at 19:37, 29 June 2016

2016-06-29T19:37:41Z

Zhangfanmark at 19:33, 29 June 2016

2016-06-29T19:33:14Z

@@ Line 39: / Line 39: @@
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
 Links to tutorials that use this module
-* Slicer4 Fiber Bundle Selection and Scalar Measurements Tutorial: https://www.slicer.org/slicerWiki/index.php/Documentation/4.5/Training#Fiber_Bundle_Selection_and_Scalar_Measurements
+* Slicer4 Fiber Bundle Selection and Scalar Measurements Tutorial: https://www.slicer.org/wiki/Documentation/4.5/Training#Fiber_Bundle_Selection_and_Scalar_Measurements * Tractography selection and measurements in command line interface (CLI) mode: http://dmri.slicer.org/tutorials/tractography_measurement
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels and their use}}

@@ Line 40: / Line 40: @@
 Links to tutorials that use this module
 * Slicer4 Fiber Bundle Selection and Scalar Measurements Tutorial: https://www.slicer.org/slicerWiki/index.php/Documentation/4.5/Training#Fiber_Bundle_Selection_and_Scalar_Measurements
-* Tractography selection and measurements in command line interface (CLI) mode: http://dmri.slicer.org/tutorials/cli_measurements
+* Tractography selection and measurements in command line interface (CLI) mode: http://dmri.slicer.org/tutorials/tractography_measurement
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels and their use}}

@@ Line 40: / Line 40: @@
 Links to tutorials that use this module
 * Slicer4 Fiber Bundle Selection and Scalar Measurements Tutorial: https://www.slicer.org/slicerWiki/index.php/Documentation/4.5/Training#Fiber_Bundle_Selection_and_Scalar_Measurements
-* Tractography selection and measurements in command line interface (CLI) mode: http://slicerdmri.github.io/docs/tutorials/CLITutorial.pdf
+* Tractography selection and measurements in command line interface (CLI) mode: http://dmri.slicer.org/tutorials/cli_measurements
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels and their use}}

@@ Line 40: / Line 40: @@
 Links to tutorials that use this module
 * Slicer4 Fiber Bundle Selection and Scalar Measurements Tutorial: https://www.slicer.org/slicerWiki/index.php/Documentation/4.5/Training#Fiber_Bundle_Selection_and_Scalar_Measurements
+* Tractography selection and measurements in command line interface (CLI) mode: http://slicerdmri.github.io/docs/tutorials/CLITutorial.pdf
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels and their use}}

← Older revision		Revision as of 18:39, 6 July 2016
Line 45:		Line 45:

	{{documentation/{{documentation/version}}/module-parametersdescription}}		{{documentation/{{documentation/version}}/module-parametersdescription}}
−
−	~~REMOVE THIS FROM BELOW WHEN AUTO GENERATED:~~
−	~~A list of all the panels in the interface, their features, what they mean, and how to use them. For instance:~~
−
−	~~{\|style="width: 100%"~~
−	\|
−	* Parameters panel:
−	** Parameters: select an existing setting for the module or create a new one.
−	* IO panel:
−	** Input Label Map: select an existing label map volume.
−	** Input FiberBundle: Select the fibers that you want to filter.
−	** Output FiberBundle: Select the bundle that you want to create or modify from a list.
−	* Label Regions Definition panel :
−	** Labels to include: A comma separated list of label values to include in the output fiber bundles set.
−	** Combine Include Labels: OR or AND logical operation to combine individual label values in the above list.
−	** Labels to exclude: A comma separated list of label values to exclude from the output fiber bundles set.
−	** Combine Exclude Labels: OR or AND logical operation to combine individual label values in the above list.

	<!-- ---------------------------- -->		<!-- ---------------------------- -->

@@ Line 18: / Line 18: @@
 |Image:Logo-splnew.jpg|Surgical Planning Laboratory
 |Image:NAC-logo.png|NAC
-|Image:Fiber select.PNG|Tract selection
+|Image:Wholebraintractography.png|Whole brain tractography
 }}
 {{documentation/{{documentation/version}}/module-introduction-end}}

@@ Line 8: / Line 8: @@
 {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
 {{documentation/{{documentation/version}}/module-introduction-row}}
-This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
-Author: Alex Yarmarkovich, Isomics, SPL<br>
+{{documentation/{{documentation/version}}/module-acknowledgements}}
-Contributor1: Demian Wassermann, SPL<br>
+Contact:  <email>slicer-users@bwh.harvard.edu</email><br>
-Contact:  Alex Yarmarkovich, <email>alexy@bwh.harvard.edu</email><br>
+Website: http://slicerdmri.github.io/
 {{documentation/{{documentation/version}}/module-introduction-row}}
 {{documentation/{{documentation/version}}/module-introduction-logo-gallery
@@ Line 24: / Line 25: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Module Description}}
-This module is used for selecting a subset of DTI fiber tracts including or excluding certain fibers passing through a selected set of labels in the label map volume.
+{{documentation/{{documentation/version}}/module-description}}
 <!-- ---------------------------- -->
@@ Line 36: / Line 37: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
-[https://www.slicer.org/slicerWiki/index.php/Documentation/4.5/Training#Fiber_Bundle_Selection_and_Scalar_Measurements|Fiber Bundle Selection and Scalar Measurements]
+Links to tutorials that use this module
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels and their use}}
 A list of all the panels in the interface, their features, what they mean, and how to use them. For instance:
@@ Line 60: / Line 65: @@
 {{documentation/{{documentation/version}}/module-section|Similar Modules}}
 * Tractography Label Map Seeding
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|References}}
-Publications related to this module go here. Links to pdfs would be useful.
+*  http://slicerdmri.github.io/
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Information for Developers}}
-{{documentation/{{documentation/version}}/module-developerinfo}}
+* https://github.com/SlicerDMRI
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-footer}}
 <!-- ---------------------------- -->

@@ Line 14: / Line 14: @@
 {{documentation/{{documentation/version}}/module-introduction-row}}
 {{documentation/{{documentation/version}}/module-introduction-logo-gallery
 |Image:Logo-splnew.jpg|Surgical Planning Laboratory
 }}
 {{documentation/{{documentation/version}}/module-introduction-end}}
@@ Line 44: / Line 47: @@
 * Parameters panel:
 ** Parameters: select an existing setting for the module or create a new one.
 * IO panel:
 ** Input Label Map: select an existing label map volume.