Documentation/Nightly/Modules/DoseComparison - Revision history

Lasso: Moved to https://github.com/slicerrt/slicerrt

2026-01-04T20:46:36Z

Moved to https://github.com/slicerrt/slicerrt

Grundlett: Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2"

2019-11-27T02:34:48Z

Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2"

Pinter: Add validation paper reference

2018-11-28T15:06:25Z

Add validation paper reference

Hillarylia: Fixed format and typos

2016-05-12T18:51:06Z

Fixed format and typos

Pinter at 17:38, 21 January 2016

2016-01-21T17:38:54Z

Pinter: Updated screenshots

2013-11-05T17:41:34Z

Updated screenshots

Pinter at 21:52, 26 August 2013

2013-08-26T21:52:31Z

Pinter: Added link to SlicerRT home

2013-08-26T21:51:35Z

Added link to SlicerRT home

Pinter: Added OCAIRO logo

2013-08-14T19:27:39Z

Added OCAIRO logo

UpdateBot: Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

2013-06-14T07:53:57Z

Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

← Older revision		Revision as of 20:46, 4 January 2026
Line 1:		Line 1:
−	~~<noinclude>{{documentation/versioncheck}}</noinclude>~~	+	Moved to https://github.com/slicerrt/slicerrt
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-header}}~~
−	~~<!-- ---------------------------- -->~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|Introduction and Acknowledgements}}~~
−	~~{{documentation/{{documentation/version}}/module-introduction-start\|{{documentation/modulename}}}}~~
−	~~{{documentation/{{documentation/version}}/module-introduction-row}}~~
−	This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br>
−	~~Author: Csaba Pinter (PerkLab, Queen's University)<br>~~
−	~~Contributor: Greg Sharp (Massachusetts General Hospital)<br>~~
−	~~Contact: Csaba Pinter, <email>pinter@cs.queensu.ca</email><br>~~
−	~~[[Documentation/Nightly/Extensions/SlicerRT\|Back to SlicerRT home]]~~
−	~~{{documentation/{{documentation/version}}/module-introduction-row}}~~
−	~~{{documentation/{{documentation/version}}/module-introduction-logo-gallery~~
−	~~\|{{collaborator\|logo\|cco}}\|{{collaborator\|longname\|cco}}~~
−	~~\|{{collaborator\|logo\|sparkit}}\|{{collaborator\|longname\|sparkit}}~~
−	~~\|{{collaborator\|logo\|ocairo}}\|{{collaborator\|longname\|ocairo}}~~
−	}}
−	~~{{documentation/{{documentation/version}}/module-introduction-end}}~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|Module Description}}~~
−	The {{documentation/modulename}} module computes the difference between two co-registered dose volumes using the gamma dose distribution comparison method. This module uses the gamma Plastimatch algorithm internally.
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|Use Cases}}~~
−	~~Comparing dose distributions~~
−
−	~~{\|align="center"~~
−	~~\|[[File:20160121_DoseComparisonUI.png\|thumb\|499px\|Dose Comparison module UI]]~~
−	~~\|[[File:SlicerRT_0.11_Gamma.png\|thumb\|720px\|Example of the result gamma volume]]~~
−	\|}
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|Tutorials}}~~
−	~~See [[Documentation/Nightly/Extensions/SlicerRT#Tutorials\|SlicerRT main page]]~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|Panels and their use}}~~
−	* '''Reference dose volume:''' Dose distribution used as reference
−	* '''Evaluated dose volume:''' Dose distribution used as evaluation/compare
−	* '''Mask structure:''' Segmentation and contained segment within which the gamma index is calculated, but not outside (it will be 0)
−	* '''Distance-to-agreement (DTA):''' Mark dose voxel as failed if closest dose voxel with same value found in distance higher than this threshold, ''see Low paper below''
−	* '''Dose difference criteria:''' Mark dose voxel as failed if dose difference is equal or greater than this threshold, ''see Low paper below''
−	** '''Maximum value / Custom:''' Reference dose value for threshold can be either the maximum dose in the dose map, or a custom cGy value
−	* '''Do not calculate gamma values for voxels below analysis threshold'''
−	* '''Use linear interpolation'''
−	* '''Upper bound for gamma values:''' If gamma value would be higher than this value, the value will be set instead
−	* Dose threshold on reference only
−	* '''Gamma volume:''' Output volume to contain gamma map. Needs to ~~be created using the combobox. Name will be automatically filled from the names of the input volumes~~
−	~~<!--~~
−	~~{{documentation/{{documentation/version}}/module-parametersdescription}}~~
−	~~-->~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|Similar Modules}}~~
−	~~[[Documentation/Nightly/Modules/SegmentComparison\|Segment Comparison]]~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|References}}~~
−	* General information about the algorithm
−	** Low, D. A.; Harms, W. B.; Mutic, S. & Purdy, J. A. A technique for the quantitative evaluation of dose distributions Med. Phys, 1998, 25 (5), 656/6
−	** Low, D. A. & Dempsey, J. F. Evaluation of the gamma dose distribution comparison method Med. Phys, 2003, 30 (9), 2455/10
−	* Cross-validation of the SlicerRT gamma calculation algorithm
−	** [http://perk.cs.queensu.ca/sites/perkd7.cs.queensu.ca/files/Alexander2015_AAPM_Gamma.pdf Alexander, K. M., Jechel, C., Pinter, C., Salomons, G., Lasso, A., Fichtinger, G., & Schreiner, L. J. (2015). SU‐E‐T‐231: Cross‐Validation of 3D Gamma Comparison Tools. Medical physics, 42(6Part15), 3385-3385.]
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|Information for Developers}}~~
−	~~N/A~~
−
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation~~/~~version}}~~/~~module-footer}}~~
−	~~<!-- ---------------------------- -->~~

@@ Line 12: / Line 12: @@
 Contributor: Greg Sharp (Massachusetts General Hospital)<br>
 Contact: Csaba Pinter, <email>pinter@cs.queensu.ca</email><br>
-[http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerRT Back to SlicerRT home]
+[[Documentation/Nightly/Extensions/SlicerRT|Back to SlicerRT home]]
 {{documentation/{{documentation/version}}/module-introduction-row}}
 {{documentation/{{documentation/version}}/module-introduction-logo-gallery
@@ Line 36: / Line 36: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
-See [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerRT#Tutorials SlicerRT main page]
+See [[Documentation/Nightly/Extensions/SlicerRT#Tutorials|SlicerRT main page]]
 <!-- ---------------------------- -->
@@ Line 57: / Line 57: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Similar Modules}}
-[http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentComparison Segment Comparison]
+[[Documentation/Nightly/Modules/SegmentComparison|Segment Comparison]]
 <!-- ---------------------------- -->

@@ Line 61: / Line 61: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|References}}
-* Low, D. A.; Harms, W. B.; Mutic, S. & Purdy, J. A. A technique for the quantitative evaluation of dose distributions Med. Phys, 1998, 25 (5), 656/6
+* General information about the algorithm
-* Low, D. A. & Dempsey, J. F. Evaluation of the gamma dose distribution comparison method Med. Phys, 2003, 30 (9), 2455/10
+** Low, D. A.; Harms, W. B.; Mutic, S. & Purdy, J. A. A technique for the quantitative evaluation of dose distributions Med. Phys, 1998, 25 (5), 656/6
 <!-- ---------------------------- -->

@@ Line 40: / Line 40: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels and their use}}
-* Reference dose volume: Dose distribution used as reference
+* '''Reference dose volume:''' Dose distribution used as reference
-* Evaluated dose volume: Dose distribution used as evaluation/compare
+* '''Evaluated dose volume:''' Dose distribution used as evaluation/compare
-* Mask structure: Segmentation and contained segment whithin which the gamma index is calculated, but not outside (it will be 0)
+* '''Mask structure:''' Segmentation and contained segment within which the gamma index is calculated, but not outside (it will be 0)
-* Distance-to-agreement (DTA): Mark dose voxel as failed if closest dose voxel with same value found in distance higher than this threshold, see Low paper below
+* '''Distance-to-agreement (DTA):''' Mark dose voxel as failed if closest dose voxel with same value found in distance higher than this threshold, ''see Low paper below''
-* Dose difference criteria: Mark dose voxel as failed if dose difference is equal or greater than this threshold, see Low paper below
+* '''Dose difference criteria:''' Mark dose voxel as failed if dose difference is equal or greater than this threshold, ''see Low paper below''
-** Maximum value / Custom: Reference dose value for threshold can be either the maximum dose in the dose map, or a custom cGy value
+** '''Maximum value / Custom:''' Reference dose value for threshold can be either the maximum dose in the dose map, or a custom cGy value
-* Do not calculate gamma values for voxels below (analysis threshold): self-explanatory
+* '''Do not calculate gamma values for voxels below analysis threshold'''
-* Use linear interpolation: self-explanatory
+* '''Use linear interpolation'''
-* Upper bound for gamma values: If gamma value would be higher than this value, the value will be set instead
+* '''Upper bound for gamma values:''' If gamma value would be higher than this value, the value will be set instead
 * Dose threshold on reference only
-* Gamma volume: Output volume to contain gamma map. Needs to be created using the combobox. Name will be automatically filled from the names of the input volumes
+* '''Gamma volume:''' Output volume to contain gamma map. Needs to be created using the combobox. Name will be automatically filled from the names of the input volumes
 <!--
 {{documentation/{{documentation/version}}/module-parametersdescription}}

@@ Line 30: / Line 30: @@
 {|align="center"
-|[[File:SlicerRT_0.12_DoseComparisonModuleUi.png|thumb|499px|Dose Comparison module UI]]
+|[[File:20160121_DoseComparisonUI.png|thumb|499px|Dose Comparison module UI]]
 |[[File:SlicerRT_0.11_Gamma.png|thumb|720px|Example of the result gamma volume]]
 |}
@@ Line 40: / Line 40: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels and their use}}
-* Current contour(s): Currently selected contour node (vtkMRMLContourNode) or conotur hierarchy node (vtkMRMLContourHierarchyNode)
+* Reference dose volume: Dose distribution used as reference
-* Active representation: The active representation ('''Ribbon model / Indexed labelmap / Closed surface model''') of the selected contour. If a hierarchy is selected in which the active representations of the contained contours do not match, '''Various''' is indicated
+* Evaluated dose volume: Dose distribution used as evaluation/compare
-* Change active representation: This box contains controls to convert from one representation to another
+* Mask structure: Segmentation and contained segment whithin which the gamma index is calculated, but not outside (it will be 0)
 <!--
 {{documentation/{{documentation/version}}/module-parametersdescription}}
@@ Line 49: / Line 57: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Similar Modules}}
-[http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/ContourComparison Contour Comparison]
+[http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentComparison Segment Comparison]
 <!-- ---------------------------- -->

@@ Line 58: / Line 58: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Information for Developers}}
+N/A

@@ Line 16: / Line 16: @@
 |{{collaborator|logo|cco}}|{{collaborator|longname|cco}}
 |{{collaborator|logo|sparkit}}|{{collaborator|longname|sparkit}}
 }}
 {{documentation/{{documentation/version}}/module-introduction-end}}

← Older revision		Revision as of 07:53, 14 June 2013
Line 1:		Line 1:
		+	<noinclude>{{documentation/versioncheck}}</noinclude>
	<!-- ---------------------------- -->		<!-- ---------------------------- -->
	{{documentation/{{documentation/version}}/module-header}}		{{documentation/{{documentation/version}}/module-header}}