Documentation/Nightly/Modules/DataProbe - Revision history

Mehrtash at 21:07, 17 November 2014

2014-11-17T21:07:35Z

Mehrtash at 20:55, 17 November 2014

2014-11-17T20:55:45Z

Mehrtash at 20:47, 17 November 2014

2014-11-17T20:47:08Z

Mehrtash at 20:44, 17 November 2014

2014-11-17T20:44:26Z

Mehrtash at 20:42, 17 November 2014

2014-11-17T20:42:34Z

UpdateBot: Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

2013-06-14T08:03:01Z

Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

JChris.FillionR: 4.1 -> Nightly

2012-08-22T17:05:15Z

4.1 -> Nightly

New page

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}} }}
{{documentation/{{documentation/version}}/module-introduction-row}}

Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
Author: Steve Pieper, Isomics, Inc.<br>
Contact: Steve Pieper, <email>pieper@bwh.harvard.edu</email><br>
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:Logo-isomics.png|Isomics, Inc.
|Image:Logo-namic.jpg|NA-MIC
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}

Display information about the volume data at the location of the mouse pointer in the Slice views.

[[image:Workspace 1 155.png|Sample Data Module]]


{{documentation/{{documentation/version}}/module-section|Use Cases}}
Examples:
* Use Case 1: Compare image intensity for two volumes before and after filtering by putting one in the foreground and one in the background.
* Use Case 2: Get a textual description of the label value of a segmented structure.
* Use Case 3: Determine the patient and voxel coordinates of a structure.


{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

The Data probe shows two blocks of data
* The first line displays:
** color and name of the Slice view that the mouse pointer is currently over
** the patient-space location corresponding to the mouse pointer in RAS (Right/Anterior/Superior space - see [[Coordinate_systems|the page on Coordinate Systems]] for more information)
** the orientation of the slice view
** the spacing between slices for the slice view
* The lower block of three lines displays:
** L, F, or B for Label, Foreground, and Background respectively
** the name of the volume (or None if nothing is selected)
** the IJK coordinates corresponding to the mouse pointer (see [[Coordinate_systems|the page on Coordinate Systems]] for more information)
** or Label volumes, the name corresponding to the label value (as defined by the current [[Documentation/4.0/Modules/Colors|color table]])
** the value of the volume at that coordinate (a single value for scalar volumes or the number or components for non-scalar volumes)


{{documentation/{{documentation/version}}/module-section|Similar Modules}}
[[Documentation/4.0/Modules/LabelStatistics|Label Statistics]]


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
This module is written in python.
{{documentation/{{documentation/version}}/module-developerinfo}}


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-{{documentation/{{documentation/version}}/module-section|Slice View Annotations}}
+{{documentation/{{documentation/version}}/module-section|Slice Annotations}}
 {|
 |[[image:Slice view annotations gallery 0.PNG|thumb|680px|slice view annotations in use.]]

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 ** or Label volumes, the name corresponding to the label value (as defined by the current [[Documentation/4.0/Modules/Colors|color table]])
 ** the value of the volume at that coordinate (a single value for scalar volumes or the number or components for non-scalar volumes)
 {{documentation/{{documentation/version}}/module-section|Slice View Annotations}}
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 * Use Case 2: Get a textual description of the label value of a segmented structure.
 * Use Case 3: Determine the patient and voxel coordinates of a structure.
 <!-- ---------------------------- -->

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 <!-- {{documentation/{{documentation/version}}/module-acknowledgements}}<br> -->
 Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
-Author: Steve Pieper, Isomics, Inc.<br>
+Author(s)/Contributor(s): Steve Pieper (Isomics Inc.) and Alireza Mehrtash (BWH).<br>
 Contact: Steve Pieper, <email>pieper@bwh.harvard.edu</email><br>
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 |Image:Logo-isomics.png|Isomics, Inc.
 |Image:Logo-namic.jpg|NA-MIC
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 Display information about the volume data at the location of the mouse pointer in the Slice views.
-[[image:Workspace 1 155.png|Sample Data Module]]
+[[Image:Slice view annotations gallery.PNG|Sample Data Module]]
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