Documentation/Nightly/Modules/ComputeGLCMFeatures - Revision history

https://www.slicer.org/w/index.php?action=history&feed=atom&title=Documentation%2FNightly%2FModules%2FComputeGLCMFeatures Documentation/Nightly/Modules/ComputeGLCMFeatures - Revision history 2026-04-12T06:30:35Z Revision history for this page on the wiki MediaWiki 1.33.0 https://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/ComputeGLCMFeatures&diff=52767&oldid=prev Jb.vimort: Created page with "<noinclude>{{documentation/versioncheck}}</noinclude>  {{documentation/{{documentation/version}}/module-header}} <!-- --------------------..." 2017-07-06T15:09:04Z

<p>Created page with "<noinclude>{{documentation/versioncheck}}</noinclude>  {{documentation/{{documentation/version}}/module-header}} <br /> {{documentation/{{documentation/version}}/module-header}}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> <br /> '''''Extensions:''''' [https://www.slicer.org/wiki/Documentation/Nightly/Extensions/BoneTextureExtesion BoneTextureExtesion]<br><br /> '''''Author:''''' Jean-Baptise Vimort, Kitware Inc.<br><br /> '''''Contributors:''''' Beatriz Paniagua (Kitware Inc), Lucia Cevidanes (University of Michigan - School of Dentistry), Erika Benavides (University of Michigan - School of Dentistry), Antônio Carlos de Oliveira Ruellas (University of Michigan - School of Dentistry)<br><br /> '''''Contact:''''' Jean-Baptiste Vimort, <email>jb.vimort@kitware.com</email><br><br /> '''''Acknowledgments:''''' This work was supported by the National Institute of Health (NIH) National Institute for Dental and Craniofacial Research (NIDCR) grant R21DE025306 (Textural Biomarkers of Arthritis for the Subchondral Bone in the Temporomandibular Joint), NIDCR grant R01DE024450 (Quantification of 3D bony Changes in<br /> Temporomandibular Joint Osteoarthritis) and National Institute of Biomedical Imaging and Bioengineering NIBIB) grant R01EB021391 (Shape Analysis Toolbox for Medical Image Computing Projects).<br><br /> '''''License:''''' [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br /> <br /> <gallery><br /> Image:Kitware-logo.png|Kitware Inc.<br /> Image:UofM-logo.png|University of Michigan<br /> </gallery><br /> <br /> <br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Module Description}}<br /> <br /> This module can be used in order to compute co-ocurence texture features over the input image. The computation of the run length features is based on the grey level Co-ocurence matrix (GLCM) computed with [https://itk.org/Doxygen/html/classitk_1_1Statistics_1_1ScalarImageToTextureFeaturesFilter.html itk::itkScalarImageToTextureFeaturesFilter].<br><br /> The GLCM matrix describes the texture of the whole image, it is then used to compute the following run length texture features: <br /> * Energy<br /> * Entropy<br /> * Correlation<br /> * Inverse difference moment<br /> * Inertia<br /> * Cluster shade<br /> * Cluster prominence<br /> * Haralick correlation<br /> <br /> {{documentation/{{documentation/version}}/module-section|Use Cases}}<br /> {|<br /> |[[Image:ComputeGLCMFeatures-Interface.png|500px]]<br /> |<br /> * <span style="color:blue">'''''Inputs'''''</span>: <br /> ** <span style="color:green">'''Input volume'''</span> [<span style="color:orange">index: 0</span>] : Input Volume<br /> ** <span style="color:green">'''Input mask'''</span> [<span style="color:orange">-s --inputMask</span>] (<span style="color:purple">None</span>) : A mask defining the region over which texture features will be calculated<br /> ** <span style="color:green">'''Inside Mask Value'''</span> [<span style="color:orange">-i --inputMask</span>] (<span style="color:purple">1</span>) : The pixel value that defines the ”inside” of the mask<br /> ** <span style="color:green">'''Number of Intensity bins'''</span> [<span style="color:orange">-b --binNumber</span>] (<span style="color:purple">10</span>) : The number of intensity bins<br /> ** <span style="color:green">'''Pixel Intensity Min'''</span> [<span style="color:orange">-p --pixelIntensityMin</span>] (<span style="color:purple">0</span>) : Minnimum of the pixel intensity range over which the features will be calculated<br /> ** <span style="color:green">'''Pixel Intensity Max'''</span> [<span style="color:orange">-P --pixelIntensityMax</span>] (<span style="color:purple">4000</span>) : Maximum of the pixel intensity range over which the features will be calculated<br /> * <span style="color:blue">'''''Outputs'''''</span>: <br /> ** <span style="color:green">'''Energy'''</span> [<span style="color:orange">output</span>] : Energy feature value<br /> ** <span style="color:green">'''Entropy'''</span> [<span style="color:orange">output</span>] : Entropy feature value<br /> ** <span style="color:green">'''Correlation'''</span> [<span style="color:orange">output</span>] : Correlation feature value<br /> ** <span style="color:green">'''Inverse difference moment'''</span> [<span style="color:orange">output</span>] :Inverse difference moment feature value<br /> ** <span style="color:green">'''Inertia'''</span> [<span style="color:orange">output</span>] : Inertia feature value<br /> ** <span style="color:green">'''Cluster shade'''</span> [<span style="color:orange">output</span>] : Cluster shade feature value<br /> ** <span style="color:green">'''Cluster prominence'''</span> [<span style="color:orange">output</span>] : Cluster prominence feature value<br /> ** <span style="color:green">'''Haralick correlation'''</span> [<span style="color:orange">output</span>] : Haralick correlation feature value<br /> * <span style="color:blue">'''''Advanced'''''</span>: <br /> ** <span style="color:green">'''Output Vector'''</span> [<span style="color:orange">output</span>] : Output vector containing all the feature value stored in the same order than previously <br /> |}<br /> <br /> <br /> {{documentation/{{documentation/version}}/module-section|Additional Information}}<br /> <br /> * [http://www.insight-journal.org/browse/publication/985 InsightJournal article]<br /> * [https://github.com/InsightSoftwareC BoneTextureExtension Tutorial]<br /> <br /> <br /> {{documentation/{{documentation/version}}/module-section|Similar Modules}}<br /> N/A<br /> <br /> <br /> {{documentation/{{documentation/version}}/module-section|Information for Developers}}<br /> The source code is available on [https://github.com/Kitware/BoneTextureExtension/tree/master/ComputeGLCMFeatures github]<br /> <br /> <br /> {{documentation/{{documentation/version}}/module-footer}}<br /> [[Category:Documentation/{{documentation/version}}/Modules/ShapeAnalysis]]<br /> </div>

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