Documentation/Nightly/Modules/ComputeBMFeatures - Revision history

https://www.slicer.org/w/index.php?action=history&feed=atom&title=Documentation%2FNightly%2FModules%2FComputeBMFeatures Documentation/Nightly/Modules/ComputeBMFeatures - Revision history 2026-04-08T23:15:02Z Revision history for this page on the wiki MediaWiki 1.33.0 https://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/ComputeBMFeatures&diff=55114&oldid=prev Jb.vimort: Created page with "<noinclude>{{documentation/versioncheck}}</noinclude>  {{documentation/{{documentation/version}}/module-header}} <!-- --------------------..." 2017-10-16T23:49:34Z

<p>Created page with "<noinclude>{{documentation/versioncheck}}</noinclude>  {{documentation/{{documentation/version}}/module-header}} <br /> {{documentation/{{documentation/version}}/module-header}}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> <br /> '''''Extensions:''''' [https://www.slicer.org/wiki/Documentation/Nightly/Extensions/BoneTextureExtesion BoneTextureExtesion]<br><br /> '''''Author:''''' Jean-Baptise Vimort, Kitware Inc.<br><br /> '''''Contributors:''''' Beatriz Paniagua (Kitware Inc), Lucia Cevidanes (University of Michigan - School of Dentistry), Erika Benavides (University of Michigan - School of Dentistry), Antônio Carlos de Oliveira Ruellas (University of Michigan - School of Dentistry)<br><br /> '''''Contact:''''' Jean-Baptiste Vimort, <email>jb.vimort@kitware.com</email><br><br /> '''''Acknowledgments:''''' This work was supported by the National Institute of Health (NIH) National Institute for Dental and Craniofacial Research (NIDCR) grant R21DE025306 (Textural Biomarkers of Arthritis for the Subchondral Bone in the Temporomandibular Joint), NIDCR grant R01DE024450 (Quantification of 3D bony Changes in<br /> Temporomandibular Joint Osteoarthritis) and National Institute of Biomedical Imaging and Bioengineering NIBIB) grant R01EB021391 (Shape Analysis Toolbox for Medical Image Computing Projects).<br><br /> '''''License:''''' [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br /> <br /> <gallery><br /> Image:Kitware-logo.png|Kitware Inc.<br /> Image:UofM-logo.png|University of Michigan<br /> </gallery><br /> <br /> <br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Module Description}}<br /> <br /> This module can be used in order to compute bone morphometry features of an input image. The computation of the bone morphometry features is based on a binary segmentation of the whole image and it based on the itk remote module: itkBoneMorphometry [https://github.com/InsightSoftwareConsortium/ITKBoneMorphometry itkBoneMorphometry].<br><br /> The following Bone Morphompetry Features are computed: <br /> * percent bone volume [BVTV]<br /> * trabecular thickness [TbTh]<br /> * trabecular separation [TbSp]<br /> * trabecular number [TbN]<br /> * Bone Surface to Bone Volume ratio [BSBV]<br /> <br /> {{documentation/{{documentation/version}}/module-section|Use Cases}}<br /> {|<br /> |[[Image:ComputeBMFeatures-Interface.png|500px]]<br /> |<br /> * <span style="color:blue">'''''Inputs'''''</span>: <br /> ** <span style="color:green">'''Input volume'''</span> [<span style="color:orange">index: 0</span>] : Input Volume<br /> ** <span style="color:green">'''Input mask'''</span> [<span style="color:orange">-s --inputMask</span>] (<span style="color:purple">None</span>) : A mask defining the region over which texture features will be calculated<br /> ** <span style="color:green">'''Inside Mask Value'''</span> [<span style="color:orange">-i --inputMask</span>] (<span style="color:purple">1</span>) : The pixel value that defines the ”inside” of the mask<br /> ** <span style="color:green">'''Threshold'''</span> [<span style="color:orange">-i --inputMask</span>] (<span style="color:purple">0</span>) : The threshold value that will be used for the binary segmentation of the image<br /> ** <span style="color:green">'''Neighborhood radius'''</span> [<span style="color:orange">-n --neighborhoodRadius</span>] (<span style="color:purple">4</span>) : The size of the neighborhood radius<br /> * <span style="color:blue">'''''Outputs'''''</span>: <br /> ** <span style="color:green">'''BVTV'''</span> [<span style="color:orange">output</span>] : percent bone volume feature value<br /> ** <span style="color:green">'''TbTh'''</span> [<span style="color:orange">output</span>] : trabecular thickness feature value<br /> ** <span style="color:green">'''TbSp'''</span> [<span style="color:orange">output</span>] : trabecular separation feature value<br /> ** <span style="color:green">'''TbN'''</span> [<span style="color:orange">output</span>] :trabecular number feature value<br /> ** <span style="color:green">'''BSBV'''</span> [<span style="color:orange">output</span>] : Bone Surface to Bone Volume ratio feature value<br /> * <span style="color:blue">'''''Advanced'''''</span>: <br /> ** <span style="color:green">'''Output Vector'''</span> [<span style="color:orange">output</span>] : Output vector containing all the feature value stored in the same order than previously <br /> |}<br /> <br /> <br /> {{documentation/{{documentation/version}}/module-section|Additional Information}}<br /> <br /> * [https://github.com/InsightSoftwareC BoneTextureExtension Tutorial]<br /> <br /> <br /> {{documentation/{{documentation/version}}/module-section|Similar Modules}}<br /> N/A<br /> <br /> <br /> {{documentation/{{documentation/version}}/module-section|Information for Developers}}<br /> The source code is available on [https://github.com/Kitware/BoneTextureExtension/tree/master/ComputeBMFeatures github]<br /> <br /> <br /> {{documentation/{{documentation/version}}/module-footer}}<br /> [[Category:Documentation/{{documentation/version}}/Modules/ShapeAnalysis]]<br /> </div>

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