https://www.slicer.org/w/index.php?action=history&feed=atom&title=Documentation%2FNightly%2FModules%2FComputeBMFeatureMapsDocumentation/Nightly/Modules/ComputeBMFeatureMaps - Revision history2026-04-12T15:12:42ZRevision history for this page on the wikiMediaWiki 1.33.0https://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/ComputeBMFeatureMaps&diff=55115&oldid=prevJb.vimort at 23:50, 16 October 20172017-10-16T23:50:35Z<p></p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 23:50, 16 October 2017</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l25" >Line 25:</td>
<td colspan="2" class="diff-lineno">Line 25:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{documentation/{{documentation/version}}/module-section|Module Description}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{documentation/{{documentation/version}}/module-section|Module Description}}</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- ---------------------------- --></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- ---------------------------- --></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>This module can be used in order to compute bone morphometry <del class="diffchange diffchange-inline">features </del>maps of an input image. The computation of the bone morphometry features is based on a binary segmentation of the whole image and it based on the itk remote module: itkBoneMorphometry [https://github.com/InsightSoftwareConsortium/ITKBoneMorphometry itkBoneMorphometry].<br></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>This module can be used in order to compute bone morphometry <ins class="diffchange diffchange-inline">feature </ins>maps of an input image. The computation of the bone morphometry features is based on a binary segmentation of the whole image and it based on the itk remote module: itkBoneMorphometry [https://github.com/InsightSoftwareConsortium/ITKBoneMorphometry itkBoneMorphometry].<br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The following Bone Morphompetry Features are computed: </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The following Bone Morphompetry Features are computed: </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* percent bone volume [BVTV]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* percent bone volume [BVTV]</div></td></tr>
</table>Jb.vimorthttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/ComputeBMFeatureMaps&diff=55113&oldid=prevJb.vimort: Created page with "<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- --------------------..."2017-10-16T23:20:35Z<p>Created page with "<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- --------------------..."</p>
<p><b>New page</b></p><div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<br />
'''''Extensions:''''' [https://www.slicer.org/wiki/Documentation/Nightly/Extensions/BoneTextureExtesion BoneTextureExtesion]<br><br />
'''''Author:''''' Jean-Baptise Vimort, Kitware Inc.<br><br />
'''''Contributors:''''' Beatriz Paniagua (Kitware Inc), Lucia Cevidanes (University of Michigan - School of Dentistry), Erika Benavides (University of Michigan - School of Dentistry), Antônio Carlos de Oliveira Ruellas (University of Michigan - School of Dentistry)<br><br />
'''''Contact:''''' Jean-Baptiste Vimort, <email>jb.vimort@kitware.com</email><br><br />
'''''Acknowledgments:''''' This work was supported by the National Institute of Health (NIH) National Institute for Dental and Craniofacial Research (NIDCR) grant R21DE025306 (Textural Biomarkers of Arthritis for the Subchondral Bone in the Temporomandibular Joint), NIDCR grant R01DE024450 (Quantification of 3D bony Changes in<br />
Temporomandibular Joint Osteoarthritis) and National Institute of Biomedical Imaging and Bioengineering NIBIB) grant R01EB021391 (Shape Analysis Toolbox for Medical Image Computing Projects).<br><br />
'''''License:''''' [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br />
<br />
<gallery><br />
Image:Kitware-logo.png|Kitware Inc.<br />
Image:UofM-logo.png|University of Michigan<br />
</gallery><br />
<br />
<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
<!-- ---------------------------- --><br />
This module can be used in order to compute bone morphometry features maps of an input image. The computation of the bone morphometry features is based on a binary segmentation of the whole image and it based on the itk remote module: itkBoneMorphometry [https://github.com/InsightSoftwareConsortium/ITKBoneMorphometry itkBoneMorphometry].<br><br />
The following Bone Morphompetry Features are computed: <br />
* percent bone volume [BVTV]<br />
* trabecular thickness [TbTh]<br />
* trabecular separation [TbSp]<br />
* trabecular number [TbN]<br />
* Bone Surface to Bone Volume ratio [BSBV]<br />
<br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
{|<br />
|[[Image:ComputeBMFeatureMaps-Interface.png|500px]]<br />
|<br />
* <span style="color:blue">'''''Inputs'''''</span>: <br />
** <span style="color:green">'''Input volume'''</span> [<span style="color:orange">index: 0</span>] : Input Volume<br />
** <span style="color:green">'''Output volume'''</span> [<span style="color:orange">index: 1</span>] : Output diffusion-weighted volume where the 8 feature maps will be stored<br />
** <span style="color:green">'''Input mask'''</span> [<span style="color:orange">-s --inputMask</span>] (<span style="color:purple">None</span>) : A mask defining the region over which texture features will be calculated<br />
** <span style="color:green">'''Threshold'''</span> [<span style="color:orange">-i --inputMask</span>] (<span style="color:purple">0</span>) : The threshold value that will be used for the binary segmentation of the image<br />
** <span style="color:green">'''Neighborhood radius'''</span> [<span style="color:orange">-n --neighborhoodRadius</span>] (<span style="color:purple">4</span>) : The size of the neighborhood radius<br />
<br />
|}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Additional Information}}<br />
<br />
* [https://github.com/InsightSoftwareC BoneTextureExtension Tutorial]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
The source code is available on [https://github.com/Kitware/BoneTextureExtension/tree/master/ComputeBMFeatureMaps github]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
[[Category:Documentation/{{documentation/version}}/Modules/ShapeAnalysis]]<br />
<!-- ---------------------------- --></div>Jb.vimort