Documentation/Nightly/Extensions/iGyne - Revision history

Gpernelle at 18:32, 28 April 2014

2014-04-28T18:32:09Z

UpdateBot: Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

2013-06-14T07:59:06Z

Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

Gpernelle at 16:06, 26 March 2013

2013-03-26T16:06:15Z

Gpernelle at 17:26, 13 February 2013

2013-02-13T17:26:29Z

Gpernelle at 17:25, 13 February 2013

2013-02-13T17:25:33Z

Egger at 19:16, 7 January 2013

2013-01-07T19:16:45Z

Gpernelle at 19:51, 21 November 2012

2012-11-21T19:51:12Z

Xiaojun at 09:36, 14 November 2012

2012-11-14T09:36:25Z

Xiaojun at 16:27, 14 September 2012

2012-09-14T16:27:03Z

Xiaojun at 19:30, 7 September 2012

2012-09-07T19:30:46Z

@@ Line 9: / Line 9: @@
 Contributors: iGyne Team<br>
 Contact: Guillaume Pernelle, <email>gpernelle@gmail.com</email><br>
-Website: https://github.com/gpernelle/iGynePy<br>
+Website: https://github.com/gpernelle/iGyne<br>
 License: [http://www.slicer.org/pages/LicenseText Slicer license]<br>
 Related Master's Thesis: [http://www.ncigt.org/publications/item/view/2316 Labeled Needle Rendering Solution for Image Guided Brachytherapy]

← Older revision		Revision as of 07:59, 14 June 2013
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 * Xiaojun Chen, Jan Egger, Akila Viswanathan, Neha Agrawal, William Wells, Ron Kikinis, Clare Tempany, Ferenc Jolesz and Tina Kapur.  "Image Processing for MR-guided Gynecologic Interstitial Brachytherapy in AMIGO", The 9th Interventional MRI Symposium. September 22-23, 2012.
 * Gao, Farhat, Pernelle et al. "Needle Labeling for Interstitial Gynecological Brachytherapy". Fifth National Image Guided Therapy Workshop, Sept 21, 2012
-* Pernelle, Egger, Vale, Chen, Irlinger, Lueth, Wells, Kikinis, Viswanathan and Kapur. Robust Applicator Registration for Interstitial Gynecologic Brachytherapy. ABS 2013 Annual Meeting (submitted)
+* Pernelle, Egger, Vale, Chen, Irlinger, Lueth, Wells, Kikinis, Viswanathan and Kapur. Robust Applicator Registration for Interstitial Gynecologic Brachytherapy. ABS 2013 Annual Meeting
 * Pernelle. "Needle labeling for Image-Guided Brachytherapy", Masters thesis (in preparation). Technical University Munich and Ecole Centrale Marseille, Dec 14, 2012

@@ Line 9: / Line 9: @@
 Contact: Guillaume Pernelle, <email>gpernelle@gmail.com</email><br>
 Website: https://github.com/gpernelle/iGynePy<br>
-License: [http://www.slicer.org/pages/LicenseText Slicer license]
+License: [http://www.slicer.org/pages/LicenseText Slicer license]<br>
-Related Master's Thesis: [http://www.ncigt.org/publications/item/view/2316]
+Related Master's Thesis: [http://www.ncigt.org/publications/item/view/2316 Labeled Needle Rendering Solution for Image Guided Brachytherapy]
 <!-- ---------------------------- -->

@@ Line 10: / Line 10: @@
 Website: https://github.com/gpernelle/iGynePy<br>
 License: [http://www.slicer.org/pages/LicenseText Slicer license]
 <!-- ---------------------------- -->

@@ Line 5: / Line 5: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
-Authors: Guillaume Pernelle, Xiaojun Chen, Yi Gao<br>
+Authors: Guillaume Pernelle, Xiaojun Chen, Yi Gao, Jan Egger<br>
 Contributors: iGyne Team<br>
 Contact: Guillaume Pernelle, <email>gpernelle@gmail.com</email><br>

@@ Line 5: / Line 5: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
-Author: Xiaojun Chen<br>
+Authors: Guillaume Pernelle, Xiaojun Chen, Yi Gao<br>
-Contributors: iGyne Team (url coming)<br>
+Contributors: iGyne Team<br>
-Contact: Xiaojun Chen, <email>xiaojun@bwh.harvard.edu</email><br>
+Contact: Guillaume Pernelle, <email>gpernelle@gmail.com</email><br>
-Website: https://github.com/xjchen/igyne<br>
+Website: https://github.com/gpernelle/iGynePy<br>
 License: [http://www.slicer.org/pages/LicenseText Slicer license]
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|Extension Description}}
-iGyne is an open source software for MR-Guided Interstitial Gynecologic Brachytherapy. It enables on-time processing of the intra-operative MRI data via a DICOM connection to the scanner followed by a multi-stage registration of CAD models of the template and the obturator to the patient images. This allows the virtual placement of interstitial needles during the intervention. Software features include:
+iGyne is an open source software for MR-Guided Interstitial Gynecologic Brachytherapy. It enables on-time processing of the intra-operative MRI data via a DICOM connection to the scanner followed by a multi-stage registration of CAD models of the template and the obturator to the patient images. This allows the virtual placement of interstitial needles during the intervention, as well as needle detection and needle labeling.
-*Loading of Applicator CAD models and MR images
+iGyne is currently articulated in seven steps:
-*Initial registration of CAD model of the Template to MR images
+) procedure selection
-*Registration Refinement
+) applicator selection
-*Visualization of Registration
+) data importation
-*Needle Selection and Display of Virtual Needles relative to Applicator CAD models and Tumor Segmentation
+) initial applicator registration
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 {{documentation/{{documentation/version}}/extension-section|Use Cases}}
-[https://github.com/xjchen/igyne/tree/master/Sample%20data Sample data] and
+[http://slicer.kitware.com/midas3/folder/876 Phantom Study] and
-[https://github.com/xjchen/igyne/tree/master/scene%20for%20template%20and%20obturator CAD models] to use with modules.
+[https://github.com/xjchen/igyne/tree/master/Sample%20data Sample data]
 <gallery widths="200px" perrow="4">
-Image:IGyne 1.0-registration.png|Screenshot of Registration
+Image:IGyne-beforeFirstRegsitration.png|Data loaded
-Image:IGyne 1.0 needle visualization.png|Screenshot of Needle Visualization
+Image:IGyne-BeforeRefinedRegistration.png|After the initial registration
-Image:Igyne 1.0-Tumor and Needle Visualization.png|Screenshot of Tumor and Needle Visualization
+Image:IGyne-applicatorSegmentation.png|Applicator Segmentation
 </gallery>
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|Tutorials}}
-[[media:IGyne1.0_Tutorial.ppt | iGyne Tutorial]] (a .PPT file with 18 pages) will guide you step-by-step through the process of loading of applicator CAD models, performing registration, selecting virtual needle and viewing the results within Slicer4. It will take about 10 minutes to finish this tutorial.
+A video tutorial should be soon available
 <!--<gallery widths="200px" perrow="4">
 </gallery>-->
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 * http://www.na-mic.org/Wiki/index.php/2012_Summer_Project_Week:iGyne
 * Xiaojun Chen, Jan Egger, Akila Viswanathan, Neha Agrawal, William Wells, Ron Kikinis, Clare Tempany, Ferenc Jolesz and Tina Kapur.  "Image Processing for MR-guided Gynecologic Interstitial Brachytherapy in AMIGO", The 9th Interventional MRI Symposium. September 22-23, 2012.
+* Gao, Farhat, Pernelle et al. "Needle Labeling for Interstitial Gynecological Brachytherapy". Fifth National Image Guided Therapy Workshop, Sept 21, 2012
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|Information for Developers}}
-{{documentation/{{documentation/version}}/extension-developerinfo}}
+iGyne is currently articulated in seven steps:
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