Documentation/Nightly/Extensions/XNATSlicer - Revision history

Sunilk at 17:35, 2 July 2014

2014-07-02T17:35:54Z

Sunilk at 21:01, 13 January 2014

2014-01-13T21:01:52Z

Sunilk at 19:13, 24 November 2013

2013-11-24T19:13:38Z

Sunilk at 19:12, 24 November 2013

2013-11-24T19:12:06Z

UpdateBot: Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

2013-06-14T08:02:39Z

Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

Fedorov at 15:05, 6 May 2013

2013-05-06T15:05:14Z

Sunilk: Created page with ' {{documentation/{{documentation/version}}/module-header}} {{doc…'

2013-02-14T19:18:10Z

Created page with ' {{documentation/{{documentation/version}}/module-header}}   {{doc…'

New page

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
[[File:XNATSlicer-Med.png]] 
Extension: [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]] 
Acknowledgments: TBD 
Author: Sunil Kumar (Washington University in St. Louis) 
Contributors: Dan Marcus (Washington University in St. Louis), Steve Pieper ({{collaborator|name|spl}}) 
Contact: Sunil Kumar, <email>kumars@mir.wustl.edu</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|namic}}|{{collaborator|longname|namic}}
|File:NRGLogo.png|The Neuroinformatics Research Group - WUSTL
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
Secure GUI-based IO with any XNAT server. Powered by PyXNAT. Win64 for now. 

Features: 
*;Download and view
**Scans (individual or batch)
**Bundled Slicer scenes (*.mrb)
**Any Slicer-readable file

*;Upload
**Bundled Slicer scenes (*.mrb)

*;Other
**Project and folder creation
**File deletion


{{documentation/{{documentation/version}}/module-section|Install Instructions}}

 The only step needed is to make sure you have Read+Write permissions for your Slicer install directory. (If you already do, you can proceed to the [[#First Login|First Login]] section.) 

<gallery widths=230px heights=230px perrow=4>
File:XNATSlicer-Perms1.jpg|1. Navigate to the directory where Slicer is installed (or the master-build directory if you are using the compiled version)
File:XNATSlicer-Perms2.jpg|2. Right click on the Slicer install folder and go to "Properties."
File:XNATSlicer-Perms3-4.jpg|3. Go to the "Security" Tab. Click on "Users" (or the equivalent group) under the "Groups or user names:" category. Then click the "edit button". A "Permissions" window will pop up. In the "Permissions" window, select "Users" again and make sure "Allow" is checked for all options. Hit "OK."
File:XNATSlicer-Perms5.jpg|4. You should now see that Users have Read+Write access for the Slicer install folder.
</gallery>
You're all set. Just load up the XNATSlicer module and click the "Login" button, and the module will install the additional libraries for you. If you need a walkthrough, look [[#First Login|below]]. 

{{documentation/{{documentation/version}}/module-section|First Login}}
{|
|}
<gallery widths=230px heights=230px perrow=4>
File:XNATSlicer-LibInstall1.jpg|1. During your first login, the XNATSlicer module will install it's external libraries for you. Just click the "Login" button.
File:XNATSlicer-LibInstall2.jpg|2. You'll be notified that the module will install external libraries. Hit "OK."
File:XNATSlicer-LibInstall3.jpg|3. You'll be warned that you need full [[#Install Instructions|Read+Write]] access to your Slicer install directory. Assuming you followed the [[#Install Instructions|instructions above]], hit "OK."
File:XNATSlicer-LibInstall4.jpg|4. A popup will appear telling you what libraries are being installed.
File:XNATSlicer-LibInstall5.jpg|5. You'll be asked to restart Slicer. Afterwards, just log in to your XNAT host of choice and you're all set. See the [[#Panels and their use|"Panels and their use"]] section.
</gallery>


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
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{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

{|
|[[Image:XNATSlicer-Panel.png|thumb|340px|XNATSlicer]]
|
* Secure login
* Status updater
* Project and file browser
** Traverse via tree
** Download/view
** Upload
** Create projects and folders
** Delete folders and files
|}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

@@ Line 12: / Line 12: @@
 Author: Sunil Kumar (Moka Creative LLC , Washington University in St. Louis)<br>
 Contributors: Dan Marcus (Washington University in St. Louis), Steve Pieper ({{collaborator|name|spl}}) <br>
-Contact: Sunil Kumar, <email>sunilk@mokacreativellc.com</email><br>
+Contact: Rick Herrick, <email>herrickr@mir.wustl.edu</email><br>
 {{documentation/{{documentation/version}}/module-introduction-row}}
 {{documentation/{{documentation/version}}/module-introduction-logo-gallery

← Older revision		Revision as of 21:01, 13 January 2014
Line 24:		Line 24:
	{{documentation/{{documentation/version}}/module-section\|Module Description}}		{{documentation/{{documentation/version}}/module-section\|Module Description}}
	Secure GUI-based IO with any XNAT server. For Slicer 4.3+<br>		Secure GUI-based IO with any XNAT server. For Slicer 4.3+<br>
		+
		+
		+	== Repositories ==
		+
		+	<b>Please note the [https://github.com/MokaCreativeLLC/XNATSlicer new repository].</b>
		+
		+	For XNATSlicer for Slicer 4.2, the old repository is [https://github.com/skumar221/XNATSlicer here]
		+

@@ Line 10: / Line 10: @@
 Extension: [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br>
 Acknowledgments: TBD<br>
-Author: Sunil Kumar (Moka Creative, LLC / Washington University in St. Louis)<br>
+Author: Sunil Kumar (Moka Creative LLC , Washington University in St. Louis)<br>
 Contributors: Dan Marcus (Washington University in St. Louis), Steve Pieper ({{collaborator|name|spl}}) <br>
 Contact: Sunil Kumar, <email>sunilk@mokacreativellc.com</email><br>

← Older revision		Revision as of 08:02, 14 June 2013
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 {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
 {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
 {{documentation/{{documentation/version}}/module-introduction-row}}
-[[File:XNATSlicer-Med.png]]<br>
+[[File:XNATSlicer-MainIcon.png|center|700px]]<br>
 Extension: [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br>
 Acknowledgments: TBD<br>
-Author: Sunil Kumar (Washington University in St. Louis)<br>
+Author: Sunil Kumar (Moka Creative, LLC / Washington University in St. Louis)<br>
 Contributors: Dan Marcus (Washington University in St. Louis), Steve Pieper ({{collaborator|name|spl}}) <br>
-Contact: Sunil Kumar, <email>kumars@mir.wustl.edu</email><br>
+Contact: Sunil Kumar, <email>sunilk@mokacreativellc.com</email><br>
 {{documentation/{{documentation/version}}/module-introduction-row}}
 {{documentation/{{documentation/version}}/module-introduction-logo-gallery
@@ Line 24: / Line 23: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Module Description}}
-Secure GUI-based IO with any XNAT server.  Powered by PyXNAT.  Win64 for now.<br>
+Secure GUI-based IO with any XNAT server.  For Slicer 4.3+<br>
-Features:<br>
+Features
-*;Download and view
+----
-**Scans (individual or batch)
+* Visualize XNAT hosted images in Slicer.
-**Bundled Slicer scenes (*.mrb)
+* Create, modify and save Slicer scenes directly from/to XNAT.
-**Any Slicer-readable file
+* Toggle and customize XNAT metadata.
 <!-- ---------------------------- -->
-{{documentation/{{documentation/version}}/module-section|Install Instructions}}
+{{documentation/{{documentation/version}}/module-section|Use Cases}}
 <!-- ---------------------------- -->
-{{documentation/{{documentation/version}}/module-section|First Login}}
+{{documentation/{{documentation/version}}/module-section|Panels and their use}}
-<!-- ---------------------------- -->
+<b>For Users</b>
 {|
 |}
 {|
-|[[Image:XNATSlicer-Panel.png|thumb|340px|XNATSlicer]]
+[[File:DeveloperDesc_MainPanel.png|800px]]
 |}
@@ Line 100: / Line 73: @@
 {{documentation/{{documentation/version}}/module-section|Information for Developers}}
 {{documentation/{{documentation/version}}/module-developerinfo}}
-Source code: https://github.com/sunilk-wustl/XNATSlicer
+Source code: https://github.com/skumar221/XNATSlicer
 <!-- ---------------------------- -->