Documentation/Nightly/Extensions/Wasp - Revision history

Tomnl at 19:03, 22 December 2014

2014-12-22T19:03:23Z

2014-12-22T19:02:03Z

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@@ Line 59: / Line 59: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
 [[File:Wasp_tutorial.pptx]]

@@ Line 60: / Line 60: @@
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels and their use}}

@@ Line 9: / Line 9: @@
 {{documentation/{{documentation/version}}/module-introduction-row}}
 Extension: [[Documentation/{{documentation/version}}/Extensions/Wasp|Wasp]]<br>
 Acknowledgments:
 This work was done at the Medical Research Council (MRC) Harwell, Oxfordshire. Funded by Mouse Phenotyping Informatics Infrastructure (MPI2) <br>
@@ Line 24: / Line 27: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Module Description}}
 The plugin consists of two main components

@@ Line 32: / Line 32: @@
 *Annotation stage: Creating a new label map out of selected components from the watershed stage
-!Watershed stage!
+==Watershed stage==
 It allows the user to perform a series of Watershed segmentations on a 3D image using the SimpleITK “Morphological Watershed” without seeds.
@@ Line 43: / Line 43: @@
 A user can then use a range for this parameter (e.g. 1 to 2 with steps of 0.1 resulting in 20 label map results)
-!Annotation stage!
+==Annotation stage==
 The user can then select individual segmentations out of any of the watershed produced label map using fiducials.

@@ Line 32: / Line 32: @@
 *Annotation stage: Creating a new label map out of selected components from the watershed stage
-!Watershed stage
+!Watershed stage!
 It allows the user to perform a series of Watershed segmentations on a 3D image using the SimpleITK “Morphological Watershed” without seeds.
@@ Line 43: / Line 43: @@
 A user can then use a range for this parameter (e.g. 1 to 2 with steps of 0.1 resulting in 20 label map results)
-!Annotation stage
+!Annotation stage!
 The user can then select individual segmentations out of any of the watershed produced label map using fiducials.

← Older revision		Revision as of 18:41, 22 December 2014
Line 25:		Line 25:
	{{documentation/{{documentation/version}}/module-section\|Module Description}}		{{documentation/{{documentation/version}}/module-section\|Module Description}}

		+	Watershed Annotation and Segmentation Plugin for 3D Slicer

		+	The plugin consists of two main components
		+
		+	*Watershed stage: Perform a series of watershed filters on the original image
		+	*Annotation stage: Creating a new label map out of selected components from the watershed stage
		+
		+	!Watershed stage
		+
		+	It allows the user to perform a series of Watershed segmentations on a 3D image using the SimpleITK “Morphological Watershed” without seeds.
		+
		+	They can edit various parameters but importantly they can choose a range of values to use for the “watershed level”.
		+
		+	*When the watershed value is lower the image will be segmented into more components.
		+	*When the watershed level is higher the image will be segmented into less components
		+
		+	A user can then use a range for this parameter (e.g. 1 to 2 with steps of 0.1 resulting in 20 label map results)
		+
		+	!Annotation stage
		+
		+	The user can then select individual segmentations out of any of the watershed produced label map using fiducials.
		+
		+	This will create a new label map with only the components the user has chosen. The user can also choose the order of the labels as well.
		+
		+	A model of the label map is generated as well.

	<!-- ---------------------------- -->		<!-- ---------------------------- -->

@@ Line 14: / Line 14: @@
 Author: Thomas Lawson <br>
 Contact: Thomas Lawson, <email> tnl495@bham.ac.uk </email><br>
-[[File:Slicer-Wasp.png|200px|thumb|left|alt text]]
+[[File:Slicer-Wasp.png|200px|thumb|left|WASP (MRC Harwell)]]