Documentation/Nightly/Extensions/TCIABrowser - Revision history

Fedorov: redirect to the docs in GitHub

2023-08-03T20:57:50Z

redirect to the docs in GitHub

Lasso: fixed typo

2019-12-18T15:36:03Z

fixed typo

Mehrtash at 20:43, 31 July 2016

2016-07-31T20:43:04Z

Fedorov at 19:19, 20 May 2015

2015-05-20T19:19:32Z

Mehrtash at 14:28, 18 May 2015

2015-05-18T14:28:40Z

Mehrtash at 14:20, 18 May 2015

2015-05-18T14:20:13Z

Mehrtash at 14:14, 18 May 2015

2015-05-18T14:14:30Z

Mehrtash at 14:01, 18 May 2015

2015-05-18T14:01:59Z

Mehrtash at 14:01, 18 May 2015

2015-05-18T14:01:03Z

Mehrtash at 14:00, 18 May 2015

2015-05-18T14:00:11Z

@@ Line 1: / Line 1: @@
-<noinclude>{{documentation/versioncheck}}</noinclude>
+<noinclude>{{documentation/versioncheck}}
-<!-- ---------------------------- -->
+</noinclude>
 [[Category:Documentation/{{documentation/version}}/Modules/Informatics]]
-<!-- ---------------------------- -->
+'''Please see documentation of this module here: https://github.com/QIICR/TCIABrowser'''

@@ Line 53: / Line 53: @@
 {{Gallery
-|title=TCIA Browser Screesnshots
+|title=TCIA Browser Screenshots
 |width=480
 |height=360

@@ Line 91: / Line 91: @@
 {{documentation/{{documentation/version}}/module-section|Information for Developers}}
 * [https://github.com/QIICR/TCIABrowser Source Code]
+Checking the API from the python console:
-Tip: The REST API can be checked by [https://chrome.google.com/webstore/detail/rest-console/cokgbflfommojglbmbpenpphppikmonn?utm_source=plus REST Console] Google Chrome extension.
+<pre>
-{{documentation/{{documentation/version}}/module-developerinfo}}
+import TCIABrowserLib as tblib
 <!-- ---------------------------- -->

@@ Line 31: / Line 31: @@
 The Cancer Imaging Archive (TCIA) hosts a large collection of Cancer medical imaging data which is available to public through a programmatic interface (REST API). TCIA Browser is a Slicer module by which the user can connect to the TCIA archive, browse different collections, patient subjects, studies and series, download the images and visualize them in 3D Slicer.
-As of February 2014, the following collections of TCIA are available via public TCIA API interface (see [https://wiki.cancerimagingarchive.net/display/Public/Collections description of TCIA collections] for details):
+[https://cancerimagingarchive.net/dashboard2/ TCIA metrics dashboard] provides extensive details on the types of imaging data by anatomy and other characteristics that are available within TCIA.
 <!-- ---------------------------- -->

@@ Line 94: / Line 94: @@
 |lines=4
 |align=center
-|File:TCIA-Browser-1.png|alt1= Browsing Collections|Browsing Collections, patients and studies. (A) Collection selector combobox (B) Cache server response to the local storage (C) Icon for Clinical Information from TCGA (D) Tables are expandable (E) Status of the series (Available on local database / Available on TCIA server) (F) Download and Index to the Slicer DICOM database (local storage) (G) Download and load into the Slicer scene.
+|File:TCIA-Browser-1.png|alt1= Browsing Collections|'''Browsing Collections, patients and studies.''' (A) Collection selector combobox (B) Cache server response to the local storage (C) Icon for Clinical Information from TCGA (D) Tables are expandable (E) Status of the series (Available on local database / Available on TCIA server) (F) Download and Index to the Slicer DICOM database (local storage) (G) Download and load into the Slicer scene.
-|File:TCIA-Browser-2.png|alt2= Downloading Series|Downloading Series.
+|File:TCIA-Browser-2.png|alt2= Downloading Series|'''Downloading Series.''' Multiple series from multiple patients and studies can be downloaded at the same time. (A) Progress bars showing download status of the selected series (B) Status bar showing the current process and the status of server responses (C) Cancel downloads button.
-|File:TCIA-Browser-3.png|alt3= Extra clinical information from TCGA|Extra clinical information from TCGA.
+|File:TCIA-Browser-3.png|alt3= Extra clinical information from TCGA|'''Extra clinical information from TCGA.'''
-|File:TCIA-Browser-4.png|alt4= Settings|Settings.
+|File:TCIA-Browser-4.png|alt4= Settings|'''Settings.''' (A) Show Browser button to pop up browser. (B) Selecting folder on the local file system for storing DICOM images and json responses. (C) Adding custom API keys for accessing non-public data.
 }}
 |}
 {|
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Similar Modules}}

@@ Line 58: / Line 58: @@
 {{Gallery
-|title=Summary Statistics of Data Available from TCIA Public Collections
+|title=Summary Statistics of Data Available from TCIA Public Collections (Updated February 2014)
 |width=360
 |height=360

@@ Line 72: / Line 72: @@
-<!-- ---------------------------- -->
+<!--
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
 Not available at this time.
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels and their use}}