Documentation/Nightly/Extensions/Slicer ASLtoolkit - Revision history

Acsenrafilho at 15:03, 4 October 2024

2024-10-04T15:03:58Z

Acsenrafilho at 15:03, 4 October 2024

2024-10-04T15:03:43Z

Acsenrafilho at 15:01, 4 October 2024

2024-10-04T15:01:50Z

Acsenrafilho at 15:00, 4 October 2024

2024-10-04T15:00:52Z

Acsenrafilho at 15:00, 4 October 2024

2024-10-04T15:00:05Z

Acsenrafilho at 14:49, 4 October 2024

2024-10-04T14:49:40Z

Acsenrafilho at 18:29, 24 June 2024

2024-06-24T18:29:53Z

Acsenrafilho: Created page with "{{documentation/versioncheck}} {{documentation/{{documentation/version}}/module-header}}

← Older revision		Revision as of 15:03, 4 October 2024
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	All the project is maintained as an open-source initiative and further assistance in coding maintance and new features can be create by a community of developers. To follow the updates or even help the project, please visit the official asltk website.		All the project is maintained as an open-source initiative and further assistance in coding maintance and new features can be create by a community of developers. To follow the updates or even help the project, please visit the official asltk website.
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 [[Image:ASLtoolkit-logo.png|left|300px]]
-ASL toolkit is a library that was designed to assist users to process Arterial Spin Labeling (ASL) MRI images, since basic imaging protocols until the state-of-art models provided in the scientific literature.
+The ASL toolkit is a library that was designed to assist users to process Arterial Spin Labeling (ASL) MRI images, since basic imaging protocols until the state-of-art models provided in the scientific literature.
 The major objective of this project is to give an open-source alternative to researchers in the MRI field. However, a profound knowledge of computing and data modeling is not a prior demand. It is expected that a simple set of python commands can be helpful to fast prototyping an ASL experiment or even collect simple quantitative ASL-based information.
 This module was created in 3D Slicer to be another alternative to use the asltk framework, using a simple and quick-to-use graphical interface. The general usage here is basically the same pattern as using the python tool provided at `asltk` library. Further details can be found at the asltk official documentation.

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 {{documentation/{{documentation/version}}/module-description}}
 {|
-[[Image:ASLtoolkit-logo.png|left widths="400px"]]
+[[Image:ASLtoolkit-logo.png|left|300px]]
 ASL toolkit is a library that was designed to assist users to process Arterial Spin Labeling (ASL) MRI images, since basic imaging protocols until the state-of-art models provided in the scientific literature.

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 {{documentation/{{documentation/version}}/module-description}}
 {|
-[[Image:ASLtoolkit-logo.png|left]]
+[[Image:ASLtoolkit-logo.png|left widths="400px"]]
 ASL toolkit is a library that was designed to assist users to process Arterial Spin Labeling (ASL) MRI images, since basic imaging protocols until the state-of-art models provided in the scientific literature.

@@ Line 26: / Line 26: @@
 [[Image:ASLtoolkit-logo.png|left]]
-ASL toolkit is ... <ref>Authors (2015). Paper. DOI: </ref>.
+ASL toolkit is a library that was designed to assist users to process Arterial Spin Labeling (ASL) MRI images, since basic imaging protocols until the state-of-art models provided in the scientific literature.
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|Modules}}
-* '''Structural image denoising with tissues border preservation function''': [[Documentation/{{documentation/version}}/Modules/AADImageFilter|AAD Image Filter]]
+* '''CBF ATT Mapping''': [[Documentation/{{documentation/version}}/Modules/CBFATTMapping|CBF ATT Mapping]]
-* '''Structural image denoising without tissues border preservation function''': [[Documentation/{{documentation/version}}/Modules/IADImageFilter|IAD Image Filter]]
+* '''MultiTE ASL Mapping''': [[Documentation/{{documentation/version}}/Modules/MultiTEASLMapping|MultiTE ASL Mapping]]
 <!-- ---------------------------- -->
@@ Line 40: / Line 42: @@
 Most frequently used for these scenarios:
 * Use Case 1:
-** Another explanation
+** Create the basic CBF and ATT maps using the pCASL ASL MRI imaging protocol
 <gallery widths="400px" heights="400px" perrow="3">
-Image:MRI_raw.png|Raw T1 weighted MRI Image
+Image:CBFMap.png|CBF map
-Image:MRI_AAD.png|T1 weighted MRI Image with AAD filter (q=1.2)
+Image:ATTMap.png|ATT map
 </gallery>
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|References}}
-* da S Senra Filho, A.C., Garrido Salmon, C.E. & Murta Junior, L.O., 2015. Anomalous diffusion process applied to magnetic resonance image enhancement. Physics in Medicine and Biology, 60(6), pp.2355–2373. DOI: 10.1088/0031-9155/60/6/2355
+* Leonie Petitclerc, et al. "Ultra-long-TE arterial spin labeling reveals rapid and brain-wide blood-to-CSF water transport in humans", Neuroimage (2021). DOI: 10.1016/j.neuroimage.2021.118755
@@ Line 62: / Line 63: @@
 Repositories:
-*Source code: [https://github.com/CSIM-Toolkits/AnomalousFiltersExtension GitHub repository]
+*Source code: [https://github.com/LOAMRI/Slicer-ASLtoolkit GitHub repository]
-*Issue tracker:  [https://github.com/CSIM-Toolkits/AnomalousFiltersExtension/issues open issues and enhancement requests]
+*Issue tracker:  [https://github.com/LOAMRI/Slicer-ASLtoolkit/issues open issues and enhancement requests]
 <!-- ---------------------------- -->

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-<noinclude>{{documentation/versioncheck}}</noinclude>
+<noinclude>{{documentation/versioncheck}}
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 {{documentation/{{documentation/version}}/module-header}}
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 This work was funded by State University of Campinas, Sao Paulo, Brazil.<br>
 Author: Antonio Carlos da S. Senra Filho, LOAM Laboratory (State University of Campinas, Department of Cosmic Rays and Chronology)<br>
-Contact: Antonio Carlos da S. Senra Filho <email>senraf@unicamp.br</email><br>
+Contact: Antonio Carlos da S. Senra Filho senraf@unicamp.br
 {{documentation/{{documentation/version}}/module-introduction-row}}
 {{documentation/{{documentation/version}}/module-introduction-logo-gallery
@@ Line 60: / Line 61: @@
 Repositories:
 * Source code: [https://github.com/CSIM-Toolkits/AnomalousFiltersExtension GitHub repository]
-* Issue tracker:  [https://github.com/CSIM-Toolkits/AnomalousFiltersExtension/issues open issues and enhancement requests]
+*Source code: [https://github.com/CSIM-Toolkits/AnomalousFiltersExtension GitHub repository]
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-footer}}
 <!-- ---------------------------- -->

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 {{documentation/{{documentation/version}}/module-introduction-row}}
 {{documentation/{{documentation/version}}/module-introduction-logo-gallery
-|Image:LOAM-logo.png|LOAM Laboratory
+|Image:LOAMRI-logo.png|LOAM Laboratory
 |Image:Unicamp-logo.png|State University of Campinas
 }}