Documentation/Nightly/Extensions/SlicerDMRI - Revision history

Pieper: I think I've done my share of DMRI over the years... : )

2016-10-12T11:31:44Z

I think I've done my share of DMRI over the years... : )

Zhangfanmark at 20:54, 11 October 2016

2016-10-11T20:54:45Z

Zhangfanmark at 20:43, 11 October 2016

2016-10-11T20:43:52Z

Zhangfanmark at 19:56, 11 October 2016

2016-10-11T19:56:10Z

Zhangfanmark at 19:42, 11 October 2016

2016-10-11T19:42:49Z

Lauren at 18:42, 11 October 2016

2016-10-11T18:42:15Z

Lauren at 18:38, 11 October 2016

2016-10-11T18:38:41Z

Lauren at 18:38, 11 October 2016

2016-10-11T18:38:00Z

Lauren: Created page with "{{documentation/versioncheck}} {{documentation/{{documentation/version}}/module-header}}

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 * NIH P41EB015902 (Neuroimaging Analysis Center)
 * National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
-Major Contributors: Lauren J. O'Donnell ({{collaborator|name|spl}}), Isaiah Norton (Brigham and Women's Hospital),  Raul San Jose Estepar (Brigham and Women's Hospital), Carl-Fredrik Westin (Brigham and Women's Hospital), Alex Yarmarkovich<br>
+Major Contributors: Lauren J. O'Donnell ({{collaborator|name|spl}}), Isaiah Norton (Brigham and Women's Hospital),  Raul San Jose Estepar (Brigham and Women's Hospital), Carl-Fredrik Westin (Brigham and Women's Hospital), Steve Pieper, Alex Yarmarkovich<br>
 License: [http://www.slicer.org/pages/LicenseText Slicer License]

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 * [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Maps]]: Computes scalar measures from a diffusion tensor dataset.
 * [[Documentation/Nightly/Modules/DWIConverter|DWIConverter]]: Converts diffusion weighted MR images in dicom series into Nrrd format for analysis in Slicer.
 * [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]:  Implements DT image resampling through the use of itk Transforms.
 * [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar/Vector/DWI Volume]]: Implements image and vector-image resampling through the use of its Transforms.
 * [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]: Allows the user to modify the display of diffusion tractography.
 * [[Documentation/Nightly/Modules/FiberTractMeasurements|Tractography Measurements]]: Computes whole-fiber scalar measurements from a directory of VTK fiber bundle files
@@ Line 62: / Line 63: @@
 * [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Tractography to Mask Image]]: Allows a user to set the specified label value in the label map at every vertex in each of the fibers in a bundle.
 * [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]]: Traces fibers in a DWI Volume using the multiple tensor unscented Kalman Filter methodology.
 {{documentation/{{documentation/version}}/extension-section|References}}

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 License: [http://www.slicer.org/pages/LicenseText Slicer License]
 |}
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 {{documentation/{{documentation/version}}/extension-section|Modules}}
 * [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Brain Masking]]: Creates a brain mask from a diffusion weighted image volume
 * [[Documentation/Nightly/Modules/DWIToDTIEstimation|Diffusion Tensor Estimation]]: Estimates the diffusion tensor model from diffusion weighted images.

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 * DICOM2Full Brain Tractography:
-* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Brain Masking]]:
+* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Brain Masking]]: Creates a brain mask from a diffusion weighted image volume
-* [[Documentation/Nightly/Modules/DWIToDTIEstimation|Diffusion Tensor Estimation]]:
+* [[Documentation/Nightly/Modules/DWIToDTIEstimation|Diffusion Tensor Estimation]]: Estimates the diffusion tensor model from diffusion weighted images.
-* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Maps]]:
+* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Maps]]: Computes scalar measures from a diffusion tensor dataset.
-* [[Documentation/Nightly/Modules/DWIConverter|DWIConverter]]:
+* [[Documentation/Nightly/Modules/DWIConverter|DWIConverter]]: Converts diffusion weighted MR images in dicom series into Nrrd format for analysis in Slicer.
 * DWI to Full Brain Tractography:
-* [[Documentation/{{documentation/version}}/Modules/FiberTractMeasurements |Fiber Tract Measurements]]: module to quantify diffusion measures from fiber tracts
+* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]:  Implements DT image resampling through the use of itk Transforms.
-* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]:
+* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar/Vector/DWI Volume]]: Implements image and vector-image resampling through the use of its Transforms.
-* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar/Vector/DWI Volume]]:
+* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]: Allows the user to modify the display of diffusion tractography.
-* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]:
+* [[Documentation/Nightly/Modules/FiberTractMeasurements|Tractography Measurements]]: Computes whole-fiber scalar measurements from a directory of VTK fiber bundle files
-* [[Documentation/Nightly/Modules/FiberTractMeasurements|Tractography Measurements]]:
+* [[Documentation/Nightly/Modules/FiberBundleLabelSelect|Tractography ROI Selection]]: Allows a user to select tracts passing or not passing through single or multiple labels.
-* [[Documentation/Nightly/Modules/FiberBundleLabelSelect|Tractography ROI Selection]]:
+* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography ROI Seeding]]: Seeds tractography from a Diffusion Tensor Image (DTI) within a region defined by a label map.
-* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography ROI Seeding]]:
+* [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|Tractography Seeding]]: Allows interactive seeding of DTI fiber tracts starting from a list of fiducial points or vertices of a model, or a label map volume.
-* [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|Tractography Seeding]]:
+* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Tractography to Mask Image]]: Allows a user to set the specified label value in the label map at every vertex in each of the fibers in a bundle.
-* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Tractography to Mask Image]]:
+* [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]]: Traces fibers in a DWI Volume using the multiple tensor unscented Kalman Filter methodology.
 {{documentation/{{documentation/version}}/extension-section|References}}

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 {{documentation/{{documentation/version}}/extension-section|Modules}}
-*[[Documentation/{{documentation/version}}/Modules/FiberTractMeasurements |Fiber Tract Measurements]]: module to quantify diffusion measures from fiber tracts
+* DICOM2Full Brain Tractography:
+* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Brain Masking]]:
 {{documentation/{{documentation/version}}/extension-section|References}}

← Older revision		Revision as of 18:42, 11 October 2016
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	{{documentation/{{documentation/version}}/extension-section\|Modules}}		{{documentation/{{documentation/version}}/extension-section\|Modules}}

−	*[[Documentation/{{documentation/version}}/Modules/FiberTractMeasurements \|Fiber ~~tract~~ Measurements]: module to quantify diffusion measures from fiber tracts	+	*[[Documentation/{{documentation/version}}/Modules/FiberTractMeasurements \|Fiber Tract Measurements]]: module to quantify diffusion measures from fiber tracts

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 {|
+|
-[[Image:SlicerProstate_Logo_1.0_128x128.png]]
+[[Image:DMRI 3D SLICER-icon.png]]
+|
 Extension: [[Documentation/{{documentation/version}}/Extensions/SlicerDMRI|SlicerDMRI]]<br>