Documentation/Nightly/Extensions/Plastimatch - Revision history

Lasso: Moved to https://github.com/slicerrt/slicerrt

2026-01-04T22:02:19Z

Moved to https://github.com/slicerrt/slicerrt

Gregsharp: Remove obsolete link

2022-02-18T18:56:28Z

Remove obsolete link

Gregsharp: Fix tutorial links

2022-02-18T18:50:04Z

Fix tutorial links

UpdateBot: Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

2013-06-14T07:58:45Z

Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

JChris.FillionR at 19:25, 5 November 2012

2012-11-05T19:25:22Z

JChris.FillionR at 19:23, 5 November 2012

2012-11-05T19:23:32Z

JChris.FillionR: 4.1 -> Nightly

2012-08-22T17:03:48Z

4.1 -> Nightly

New page

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
Author: Greg Sharp<br>
Contributors: Jean-Christophe Fillion-Robin (Kitware)<br>
Contact: Greg Sharp, <email>gcsharp@partners.org</email><br>
Website: http://plastimatch.org/<br>
License: [http://forge.abcd.harvard.edu/gf/project/plastimatch/scmsvn/?action=browse&path=%2F*checkout*%2Fplastimatch%2Ftrunk%2Fsrc%2Fplastimatch%2FLICENSE.TXT&revision=2388 BSD]


{{documentation/{{documentation/version}}/extension-section|Extension Description}}
Plastimatch is an open source software for image computation. Our main focus is high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET). Software features include:

*B-spline method for deformable image registration (GPU and multicore accelerated)
*Demons method for deformable image registration (GPU accelerated)
*ITK-based algorithms for translation, rigid, affine, demons, and B-spline registration
*Pipelined, multi-stage registration framework with seamless conversion between most algorithms and transform types
*Landmark-based deformable registration using thin-plate splines for global registration
*Landmark-based deformable registration using radial basis functions for local corrections
*Broad support for 3D image file formats (using ITK), including DICOM, Nifti, NRRD, MetaImage, and Analyze
*DICOM and DICOM-RT import and export
*XiO import and export


{{documentation/{{documentation/version}}/extension-section|Modules}}
*[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]
*[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]
*[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]]
*[[Documentation/{{documentation/version}}/Modules/PlmDoseComparison|Plastimatch Dose Comparison]]
*[[Documentation/{{documentation/version}}/Modules/PlmDoseVolumeHistogram|Plastimatch Dose Volume Histogram]]
*[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]
*[[Documentation/{{documentation/version}}/Modules/PlmSyntheticImageGeneration|Plastimatch Synthetic Image Generation]]
*[[Documentation/{{documentation/version}}/Modules/PlmThreshBox|Plastimatch Threshold in a box]]
*[[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]]


{{documentation/{{documentation/version}}/extension-section|Use Cases}}
[http://plastimatch.org/data_sources.html Sample data] to use with modules.
<gallery widths="200px" perrow="4">
Image:plastimatch_dicomrt_ss.png|DICOM-RT Structure Set
Image:plastimatch_dicomrt_dose.png|DICOM-RT Dose
Image:plastimatch_image_1.png|Before Registration
Image:plastimatch_image_2.png|After Registration
Image:before_reg.png|Before Registration
Image:after_reg.png|After Registration
</gallery>


{{documentation/{{documentation/version}}/extension-section|Tutorials}}

<gallery widths="200px" perrow="4">
Image:plastimatch_tutorial_ppt.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1023/3D_Slicer_Plastimatch_Registration_Tutorial.ppt Download tutorial]
Image:plastimatch_tutorial_data.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1004/rider-lung-images.tar.gz Download tutorial data]
Image:plastimatch_dicomrt_tutorial_ppt.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1568/3D_Slicer_Plastimatch_DICOM_RT_Tutorial_2010_12_28.pdf Download tutorial (PDF)]
Image:plastimatch_dicomrt_ss.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/934/chest-phantom-dicomrt-xio-4.33.02.tar.gz (Download tutorial data)]
Image:3D_Slicer_Plastimatch_Landmark_Registration_Tutorial.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1622/3D_Slicer_Plastimatch_Landmark_Registration_Tutorial.ppt Download tutorial]
Image:fixed.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1619/synthetic_img.zip Download tutorial data]
</gallery>


{{documentation/{{documentation/version}}/extension-section|Similar Extensions}}
N/A


{{documentation/{{documentation/version}}/extension-section|References}}
* G Sharp, N Kandasamy, H Singh, M Folkert, "GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration," Physics in Medicine and Biology, 52(19), pp 5771-83, 2007.
* V Boldea, G Sharp, SB Jiang, D Sarrut, "4D-CT lung motion estimation with deformable registration: Quantification of motion nonlinearity and hysteresis," Medical Physics, 33(3), pp 1008-18, 2008.
* Z Wu, E Rietzel, V Boldea, D Sarrut, G Sharp, "Evaluation of deformable registration of patient lung 4DCT with sub-anatomical region segmentations," Medical Physics, 35(2), pp 775-81, 2008.
* G Sharp et al. "Plastimatch - An open source software suite for radiotherapy image processing," Proceedings of the XVIth International Conference on the use of Computers in Radiotherapy, May, 2010.
* N. Shusharina, G. Sharp "Landmark-based image registration with analytic regularization", IEEE Trans. Med. Imag., submitted, 2011.


{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
{{documentation/{{documentation/version}}/extension-developerinfo}}


{{documentation/{{documentation/version}}/extension-footer}}

← Older revision		Revision as of 22:02, 4 January 2026
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−	~~{{documentation/{{documentation/version}}/module-section\|Introduction and Acknowledgements}}~~
−	~~{{documentation/{{documentation/version}}/module-introduction-start\|{{documentation/modulename}}}}~~
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−	~~Acknowledgments:~~
−	~~This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by ... <br>~~
−	~~Author:Greg Sharp<br>~~
−	~~Contributors: Jean-Christophe Fillion-Robin ({{collaborator\|name\|kitware}})<br>~~
−	~~Contact: Greg Sharp, <email>gcsharp@partners.org</email><br>~~
−	~~Website: http://plastimatch.org/<br>~~
−	~~License: [http://forge.abcd.harvard.edu/gf/project/plastimatch/scmsvn/?action=browse&path=%2Fcheckout%2Fplastimatch%2Ftrunk%2Fsrc%2Fplastimatch%2FLICENSE.TXT&revision=2388 BSD]~~
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−	~~{{documentation/{{documentation/version}}/extension-section\|Extension Description}}~~
−	Plastimatch is an open source software for image computation. Our main focus is high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET). Software features include:
−
−	*B-spline method for deformable image registration (GPU and multicore accelerated)
−	*Demons method for deformable image registration (GPU accelerated)
−	*ITK-based algorithms for translation, rigid, affine, demons, and B-spline registration
−	*Pipelined, multi-stage registration framework with seamless conversion between most algorithms and transform types
−	*Landmark-based deformable registration using thin-plate splines for global registration
−	*Landmark-based deformable registration using radial basis functions for local corrections
−	*Broad support for 3D image file formats (using ITK), including DICOM, Nifti, NRRD, MetaImage, and Analyze
−	*DICOM and DICOM-RT import and export
−	*XiO import and export
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/extension-section\|Modules}}~~
−
−	*[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration\|Plastimatch Automatic deformable image registration]]
−	*[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP\|Plastimatch LANDWARP Landmark]]
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/extension-section\|Use Cases}}~~
−	~~[http://plastimatch.org/data_sources.html Sample data]~~ to ~~use with modules.~~
−	~~<gallery widths="200px" perrow="4">~~
−	~~Image:plastimatch_dicomrt_ss.png\|DICOM-RT Structure Set~~
−	~~Image:plastimatch_dicomrt_dose.png\|DICOM-RT Dose~~
−	~~Image:plastimatch_image_1.png\|Before Registration~~
−	~~Image:plastimatch_image_2.png\|After Registration~~
−	~~Image:before_reg.png\|Before Registration~~
−	~~Image:after_reg.png\|After Registration~~
−	~~</gallery>~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/extension-section\|Tutorials}}~~
−
−	~~<gallery widths="200" perrow="4">~~
−	~~File:Plastimatch tutorial ppt.png\|[https://sourceforge.net/projects/plastimatch/files/Sample%20Data/3D_Slicer_Plastimatch_Registration_2015_12_29.pdf/download Download tutorial]~~
−	~~File:Plastimatch tutorial data.png\|[https://sourceforge.net/projects/plastimatch/files/Sample%20Data/rider-lung-images.tar.gz/download Download tutorial data]~~
−	~~File:3D Slicer Plastimatch Landmark Registration Tutorial.png\|[~~https://~~sourceforge~~.~~net/projects/plastimatch/files/Sample%20Data/3D_Slicer_Plastimatch_Landmark_Registration_Tutorial.ppt/download Download tutorial]~~
−	~~File:Fixed.png\|[https://sourceforge.net/projects/plastimatch/files/Sample%20Data/landwarp-tutorial-images.zip/download Download tutorial data]~~
−	~~</gallery>~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/extension-section\|Similar Extensions}}~~
−	~~N/A~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/extension-section\|References}}~~
−
−	*G Sharp, N Kandasamy, H Singh, M Folkert, "GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration," Physics in Medicine and Biology, 52(19), pp 5771-83, 2007.
−	*V Boldea, G Sharp, SB Jiang, D Sarrut, "4D-CT lung motion estimation with deformable registration: Quantification of motion nonlinearity and hysteresis," Medical Physics, 33(3), pp 1008-18, 2008.
−	*Z Wu, E Rietzel, V Boldea, D Sarrut, G Sharp, "Evaluation of deformable registration of patient lung 4DCT with sub-anatomical region segmentations," Medical Physics, 35(2), pp 775-81, 2008.
−	*G Sharp et al. "Plastimatch - An open source software suite for radiotherapy image processing," Proceedings of the XVIth International Conference on the use of Computers in Radiotherapy, May, 2010.
−	*N. Shusharina, G. Sharp "Landmark-based image registration with analytic regularization", IEEE Trans. Med. Imag., submitted, 2011.
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/extension-section\|Information for Developers}}~~
−	~~{{documentation/{{documentation/version}}/extension-developerinfo}}~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation~~/~~version}}~~/~~extension-footer}}~~
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	*[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration\|Plastimatch Automatic deformable image registration]]		*[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration\|Plastimatch Automatic deformable image registration]]
−	*[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport\|Plastimatch DICOM-RT import]]
	*[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP\|Plastimatch LANDWARP Landmark]]		*[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP\|Plastimatch LANDWARP Landmark]]

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 {{documentation/{{documentation/version}}/extension-section|Modules}}
 *[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]
 *[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]
@@ Line 57: / Line 59: @@
 {{documentation/{{documentation/version}}/extension-section|Tutorials}}
-<gallery widths="200px" perrow="4">
+<gallery widths="200" perrow="4">
-Image:plastimatch_tutorial_ppt.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1023/3D_Slicer_Plastimatch_Registration_Tutorial.ppt Download tutorial]
+File:Plastimatch tutorial ppt.png|[https://sourceforge.net/projects/plastimatch/files/Sample%20Data/3D_Slicer_Plastimatch_Registration_2015_12_29.pdf/download Download tutorial]
-Image:plastimatch_tutorial_data.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1004/rider-lung-images.tar.gz Download tutorial data]
+File:Plastimatch tutorial data.png|[https://sourceforge.net/projects/plastimatch/files/Sample%20Data/rider-lung-images.tar.gz/download Download tutorial data]
-Image:plastimatch_dicomrt_tutorial_ppt.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1568/3D_Slicer_Plastimatch_DICOM_RT_Tutorial_2010_12_28.pdf Download tutorial (PDF)]
+File:3D Slicer Plastimatch Landmark Registration Tutorial.png|[https://sourceforge.net/projects/plastimatch/files/Sample%20Data/3D_Slicer_Plastimatch_Landmark_Registration_Tutorial.ppt/download Download tutorial]
-Image:plastimatch_dicomrt_ss.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/934/chest-phantom-dicomrt-xio-4.33.02.tar.gz (Download tutorial data)]
+File:Fixed.png|[https://sourceforge.net/projects/plastimatch/files/Sample%20Data/landwarp-tutorial-images.zip/download Download tutorial data]
 </gallery>
@@ Line 72: / Line 72: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|References}}
 * G Sharp, N Kandasamy, H Singh, M Folkert, "GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration," Physics in Medicine and Biology, 52(19), pp 5771-83, 2007.
-* V Boldea, G Sharp, SB Jiang, D Sarrut, "4D-CT lung motion estimation with deformable registration: Quantification of motion nonlinearity and hysteresis," Medical Physics, 33(3), pp 1008-18, 2008.
+*G Sharp, N Kandasamy, H Singh, M Folkert, "GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration," Physics in Medicine and Biology, 52(19), pp 5771-83, 2007.
-* Z Wu, E Rietzel, V Boldea, D Sarrut, G Sharp, "Evaluation of deformable registration of patient lung 4DCT with sub-anatomical region segmentations," Medical Physics, 35(2), pp 775-81, 2008.
+*V Boldea, G Sharp, SB Jiang, D Sarrut, "4D-CT lung motion estimation with deformable registration: Quantification of motion nonlinearity and hysteresis," Medical Physics, 33(3), pp 1008-18, 2008.
-* G Sharp et al. "Plastimatch - An open source software suite for radiotherapy image processing," Proceedings of the XVIth International Conference on the use of Computers in Radiotherapy, May, 2010.
+*Z Wu, E Rietzel, V Boldea, D Sarrut, G Sharp, "Evaluation of deformable registration of patient lung 4DCT with sub-anatomical region segmentations," Medical Physics, 35(2), pp 775-81, 2008.
-* N. Shusharina, G. Sharp "Landmark-based image registration with analytic regularization", IEEE Trans. Med. Imag., submitted, 2011.
+*G Sharp et al. "Plastimatch - An open source software suite for radiotherapy image processing," Proceedings of the XVIth International Conference on the use of Computers in Radiotherapy, May, 2010.
 <!-- ---------------------------- -->

@@ Line 5: / Line 5: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
-Author: Greg Sharp<br>
+{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
-Contributors: Jean-Christophe Fillion-Robin (Kitware)<br>
+{{documentation/{{documentation/version}}/module-introduction-row}}
 Contact: Greg Sharp, <email>gcsharp@partners.org</email><br>
 Website: http://plastimatch.org/<br>
 License: [http://forge.abcd.harvard.edu/gf/project/plastimatch/scmsvn/?action=browse&path=%2F*checkout*%2Fplastimatch%2Ftrunk%2Fsrc%2Fplastimatch%2FLICENSE.TXT&revision=2388 BSD]
+{{documentation/{{documentation/version}}/module-introduction-row}}
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 *[[Documentation/{{documentation/version}}/Modules/PlmDoseVolumeHistogram|Plastimatch Dose Volume Histogram]]
 *[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]
 <!-- ---------------------------- -->