Gpernelle at 18:33, 28 April 2014

2014-04-28T18:33:15Z

Gpernelle: Created page with 'NeedleFinder documentation TBD {{documentation/versioncheck}} {{documentation/{{documentation/version}}/module-heade…'

2014-04-28T18:32:33Z

Created page with 'NeedleFinder documentation TBD <noinclude>{{documentation/versioncheck}}</noinclude>  {{documentation/{{documentation/version}}/module-heade…'

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NeedleFinder documentation TBD

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NeedleFinder: fast interactive needle detection.It provides interactive tools to segment needles in MR/CT images. It has been mostly tested on MRI from gynelogical brachytherapy cases. [6]

{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
Authors: Guillaume Pernelle<br>
Contact: Guillaume Pernelle, <email>gpernelle@gmail.com</email><br>
Website: https://github.com/gpernelle/NeedleFinder<br>
License: [http://www.slicer.org/pages/LicenseText Slicer license]<br>


{{documentation/{{documentation/version}}/extension-section|Extension Description}}
NeedleFinder: fast interactive needle detection.It provides interactive tools to segment needles in MR/CT images. It has been mostly tested on MRI from gynelogical brachytherapy cases.


{{documentation/{{documentation/version}}/extension-section|Modules}}


{{documentation/{{documentation/version}}/extension-section|Use Cases}}
[http://slicer.kitware.com/midas3/folder/876 Phantom Study] and
[https://github.com/xjchen/igyne/tree/master/Sample%20data Sample data]

<gallery widths="200px" perrow="4">
Image:IGyne-needleSegmentation.png|Real needles segmentation

</gallery>


{{documentation/{{documentation/version}}/extension-section|Similar Extensions}}
N/A


{{documentation/{{documentation/version}}/extension-section|References}}
[1] http://www.na-mic.org/Wiki/index.php/2012_Summer_Project_Week:iGyne
[2] Xiaojun Chen, Jan Egger, Akila Viswanathan, Neha Agrawal, William Wells, Ron Kikinis, Clare Tempany, Ferenc Jolesz and Tina Kapur. "Image Processing for MR-guided Gynecologic Interstitial Brachytherapy in AMIGO", The 9th Interventional MRI Symposium. September 22-23, 2012.
[3] Gao, Farhat, Pernelle et al. "Needle Labeling for Interstitial Gynecological Brachytherapy". Fifth National Image Guided Therapy Workshop, Sept 21, 2012
[4] Pernelle, Egger, Vale, Chen, Irlinger, Lueth, Wells, Kikinis, Viswanathan and Kapur. Robust Applicator Registration for Interstitial Gynecologic Brachytherapy. ABS 2013 Annual Meeting
[5] Pernelle. "Needle labeling for Image-Guided Brachytherapy", Masters thesis (in preparation). Technical University Munich and Ecole Centrale Marseille, Dec 14, 2012
[6] Pernelle, Guillaume, et al. "Validation of Catheter Segmentation for MR-Guided Gynecologic Cancer Brachytherapy." Medical Image Computing and Computer-Assisted Intervention–MICCAI 2013. Springer Berlin Heidelberg, 2013. 380-387.

{{documentation/{{documentation/version}}/extension-section|Information for Developers}}

Start by clicking on "Start Giving Needle Tips" and at each click in the 2D axial viewer, a needle will be segmented. You can display, delete the needles individually or all together. You can also differentiate the different insertion steps and separate each group of needles. A table shows some parameters of the caculated needles. If a registration has been done previously, it will assign to each needle the most probable label. It is also possible to tweak the needle segmentation parameters.


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@@ Line 37: / Line 37: @@
 {{documentation/{{documentation/version}}/extension-section|References}}
 [1] http://www.na-mic.org/Wiki/index.php/2012_Summer_Project_Week:iGyne
 [2] Xiaojun Chen, Jan Egger, Akila Viswanathan, Neha Agrawal, William Wells, Ron Kikinis, Clare Tempany, Ferenc Jolesz and Tina Kapur.  "Image Processing for MR-guided Gynecologic Interstitial Brachytherapy in AMIGO", The 9th Interventional MRI Symposium. September 22-23, 2012.
 [3] Gao, Farhat, Pernelle et al. "Needle Labeling for Interstitial Gynecological Brachytherapy". Fifth National Image Guided Therapy Workshop, Sept 21, 2012
 [4] Pernelle, Egger, Vale, Chen, Irlinger, Lueth, Wells, Kikinis, Viswanathan and Kapur. Robust Applicator Registration for Interstitial Gynecologic Brachytherapy. ABS 2013 Annual Meeting
 [5] Pernelle. "Needle labeling for Image-Guided Brachytherapy", Masters thesis (in preparation). Technical University Munich and Ecole Centrale Marseille, Dec 14, 2012
 [6] Pernelle, Guillaume, et al. "Validation of Catheter Segmentation for MR-Guided Gynecologic Cancer Brachytherapy." Medical Image Computing and Computer-Assisted Intervention–MICCAI 2013. Springer Berlin Heidelberg, 2013. 380-387.
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 {{documentation/{{documentation/version}}/extension-section|Information for Developers}}
-Start by clicking on "Start Giving Needle Tips" and at each click in the 2D axial viewer, a needle will be segmented. You can display, delete the needles individually or all together. You can also differentiate the different insertion steps and separate each group of needles. A table shows some parameters of the caculated needles. If a registration has been done previously, it will assign to each needle the most probable label. It is also possible to tweak the needle segmentation parameters.
+Start by clicking on "Start Giving Needle Tips" and at each click in the 2D axial viewer, a needle will be segmented. You can display, delete the needles individually or all together. You can also differentiate the different insertion steps and separate each group of needles.
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Documentation/Nightly/Extensions/NeedleFinder - Revision history

Gpernelle at 18:33, 28 April 2014

Gpernelle: Created page with 'NeedleFinder documentation TBD {{documentation/versioncheck}} {{documentation/{{documentation/version}}/module-heade…'