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Fbudin at 19:49, 20 August 2014
2014-08-20T19:49:10Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 19:49, 20 August 2014</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** <span style="color:green">'''rangeFile'''</span> [<span style="color:orange">--rangeFile</span>] [<span style="color:pink">-r</span>]: Input range file used to segment the image. If not specified, uses a default hard coded range that can be saved in a text file using the following option --saveDefaultRangeFile</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** <span style="color:green">'''rangeFile'''</span> [<span style="color:orange">--rangeFile</span>] [<span style="color:pink">-r</span>]: Input range file used to segment the image. If not specified, uses a default hard coded range that can be saved in a text file using the following option --saveDefaultRangeFile</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** <span style="color:green">'''saveDefaultRangeFile'''</span> [<span style="color:orange">--saveDefaultRangeFile</span>] [<span style="color:pink">-s</span>]: Save example range file containing 8 labels: air, lungs, soft tissue, fat, water, CSF, blood and muscle, cancellous bone, dense bone. More information about threshold can be found [http://en.wikipedia.org/wiki/Hounsfield_scale here]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** <span style="color:green">'''saveDefaultRangeFile'''</span> [<span style="color:orange">--saveDefaultRangeFile</span>] [<span style="color:pink">-s</span>]: Save example range file containing 8 labels: air, lungs, soft tissue, fat, water, CSF, blood and muscle, cancellous bone, dense bone. More information about threshold can be found [http://en.wikipedia.org/wiki/Hounsfield_scale here]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">** <span style="color:green">'''defaultLabelValue'''</span> [<span style="color:orange">--defaultLabelValue</span>] [<span style="color:pink">-d</span>]: Sets the label value of voxels for which no value is specified in the range file</ins></div></td></tr>
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Fbudin
https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/IntensitySegmenter&diff=38825&oldid=prev
Fbudin at 19:47, 20 August 2014
2014-08-20T19:47:58Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 19:47, 20 August 2014</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l5" >Line 5:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Author: Francois Budin<br></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Author: Francois Budin<br></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Contributors: Pengdong Xiao (Department of Orthodontics, UNC), Beatriz Paniagua (Department of Orthodontics<del class="diffchange diffchange-inline">, UNC), Francois Budin (NIRAL</del>, UNC)<br></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Contributors: <ins class="diffchange diffchange-inline">Francois Budin (NIRAL, UNC), </ins>Pengdong Xiao (Department of Orthodontics, UNC), Beatriz Paniagua (Department of Orthodontics, UNC)<br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Contact: Francois Budin, <email>fbudin@unc.edu</email><br></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Contact: Francois Budin, <email>fbudin@unc.edu</email><br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Website: https://www.nitrc.org/projects/dentaltools/<br></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Website: https://www.nitrc.org/projects/dentaltools/<br></div></td></tr>
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Fbudin
https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/IntensitySegmenter&diff=38791&oldid=prev
Fbudin: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'
2014-08-14T15:50:47Z
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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
Author: Francois Budin<br><br />
Contributors: Pengdong Xiao (Department of Orthodontics, UNC), Beatriz Paniagua (Department of Orthodontics, UNC), Francois Budin (NIRAL, UNC)<br><br />
Contact: Francois Budin, <email>fbudin@unc.edu</email><br><br />
Website: https://www.nitrc.org/projects/dentaltools/<br><br />
License: [http://www.slicer.org/pages/LicenseText 3D Slicer License]<br />
<gallery><br />
Image:UNC-logo.png|UNC<br />
Image:Logo-namic.jpg|NAMIC<br />
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{{documentation/{{documentation/version}}/extension-section|Extension Description}}<br />
<br />
===Quick Tour of Features and Use===<br />
<br />
IntensitySegmenter is a simple tool that segments an image according to intensity value. It is mainly used to segment CT scans using the [http://en.wikipedia.org/wiki/Hounsfield_scale Hounsfield scale] but the ranges of intensities and their corresponding labels can be specified in an input text file.<br />
<br />
A list panels in the interface, their features, what they mean, and how to use them.<br />
{|<br />
|<br />
* <span style="color:blue">'''''Parameters'''''</span>: <br />
** <span style="color:green">'''inputFile'''</span> [<span style="color:orange">--inputFile</span>] [<span style="color:pink">-i</span>]: Input Image <br />
** <span style="color:green">'''outputFile'''</span> [<span style="color:orange">--outputFile</span>] [<span style="color:pink">-o</span>]: Output Image<br />
** <span style="color:green">'''rangeFile'''</span> [<span style="color:orange">--rangeFile</span>] [<span style="color:pink">-r</span>]: Input range file used to segment the image. If not specified, uses a default hard coded range that can be saved in a text file using the following option --saveDefaultRangeFile<br />
** <span style="color:green">'''saveDefaultRangeFile'''</span> [<span style="color:orange">--saveDefaultRangeFile</span>] [<span style="color:pink">-s</span>]: Save example range file containing 8 labels: air, lungs, soft tissue, fat, water, CSF, blood and muscle, cancellous bone, dense bone. More information about threshold can be found [http://en.wikipedia.org/wiki/Hounsfield_scale here]<br />
|}<br />
<br />
Example of a range file:<br />
<pre><br />
-infty 45 0<br />
45 700 8<br />
700 +infty 9<br />
</pre><br />
The first and second values on each line are the minimum and maximum intensities for the corresponding label specified as the third value on each line.<br />
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{{documentation/{{documentation/version}}/extension-section|Use Cases}}<br />
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Image:IntensitySegmenter-OutputScreenshot.png|Screenshot<br />
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{{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br />
N/A<br />
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{{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br />
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More information as well as the source code can found on the project webpage: https://www.nitrc.org/projects/dentaltools/<br />
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Fbudin