Documentation/Nightly/Extensions/DTIPrep - Revision history

Fbudin at 22:48, 11 December 2014

2014-12-11T22:48:38Z

UpdateBot: Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

2013-06-14T08:04:47Z

Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

Fbudin: /* Quick Tour of Features and Use */

2013-01-30T22:12:51Z

Quick Tour of Features and Use

Fbudin: /* Quick Tour of Features and Use */

2013-01-30T22:12:29Z

Quick Tour of Features and Use

Fbudin: /* Quick Tour of Features and Use */

2013-01-30T14:31:35Z

Quick Tour of Features and Use

Fbudin: /* Acknowledgment */

2013-01-30T14:31:16Z

Acknowledgment

Fbudin: /* Quick Tour of Features and Use */

2013-01-30T14:31:02Z

Quick Tour of Features and Use

Fbudin at 21:24, 29 January 2013

2013-01-29T21:24:50Z

Fbudin: /* Quick Tour of Features and Use */

2013-01-29T21:21:06Z

Quick Tour of Features and Use

Fbudin: /* More Information */

2013-01-29T21:12:25Z

More Information

@@ Line 8: / Line 8: @@
 Contact: Francois Budin, <email>fbudin@unc.edu</email><br>
 Website: http://www.nitrc.org/projects/dtiprep/<br>
-License: [http://www.nitrc.org/include/glossary.php#187 BSD]
+License: [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]
 <gallery>
 Image:UNC-NIRAL.png‎|NIRAL

← Older revision		Revision as of 08:04, 14 June 2013
Line 1:		Line 1:
		+	<noinclude>{{documentation/versioncheck}}</noinclude>
	<!-- ---------------------------- -->		<!-- ---------------------------- -->
	{{documentation/{{documentation/version}}/module-header}}		{{documentation/{{documentation/version}}/module-header}}

@@ Line 18: / Line 18: @@
 ===Quick Tour of Features and Use===
-The DWI/DTI Quality Control Processes from DICOM data to qualified dwi image.
+The DWI/DTI Quality Control Processes from DICOM data to qualified DWI image.
 A list panels in the interface, their features, what they mean, and how to use them.

@@ Line 18: / Line 18: @@
 ===Quick Tour of Features and Use===
-The DWI/DTI Quality Control Processes from dicom data to qualified dwi image.
+The DWI/DTI Quality Control Processes from DICOM data to qualified dwi image.
 A list panels in the interface, their features, what they mean, and how to use them.

@@ Line 30: / Line 30: @@
 ** <span style="color:green">'''Create Default Protocol'''</span> [<span style="color:orange">--default</span>] [<span style="color:pink">-d</span>]: create default protocol xml file
 ** <span style="color:green">'''Check by Protocol'''</span> [<span style="color:orange">--check</span>] [<span style="color:pink">-c</span>]: check by protocol xml file. Default operation
-|[[DTIPrep-Extension-GUI.png|thumb|280px|User Interface]]
+|[[Image:DTIPrep-Extension-GUI.png|thumb|280px|User Interface]]
 |}

@@ Line 42: / Line 42: @@
 {{documentation/{{documentation/version}}/extension-section|Use Cases}}
 <gallery widths="200px" perrow="4">
-Image:GUI.png|DWI image loaded
+Image:DTIPrep-Extension-GUI.png|DWI image loaded
 Image:DTIPrep-Extension-Sphere.png|Sphere representing the gradient directions
 </gallery>

@@ Line 33: / Line 33: @@
 |}
-==More Information==
+{{documentation/{{documentation/version}}/extension-section|More Information}}
 ===Acknowledgment===
@@ Line 42: / Line 42: @@
 {{documentation/{{documentation/version}}/extension-section|Use Cases}}
 <gallery widths="200px" perrow="4">
-Image:FiberViewerLight1.2-ScreenShot.png|Screenshot
+Image:GUI.png|DWI image loaded
 </gallery>
@@ Line 52: / Line 53: @@
 {{documentation/{{documentation/version}}/extension-section|Information for Developers}}
-More information as well as the source code can found on the project webpage: http://www.nitrc.org/projects/fvlight/
+More information as well as the source code can found on the project webpage: http://www.nitrc.org/projects/dtiprep/
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-footer}}
 <!-- ---------------------------- -->

@@ Line 25: / Line 25: @@
 * <span style="color:blue">'''''Input/Ouput'''''</span>: Input/output parameters
 ** <span style="color:green">'''DWI file'''</span> [<span style="color:orange">--DWINrrdFile</span>] [<span style="color:pink">-w</span>]: DWI file name to convert dicom image series into or to be checked (nrrd/nhdr)
 ** <span style="color:green">'''xml Protocol File'''</span> [<span style="color:orange">--xmlProtocol</span>] [<span style="color:pink">-p</span>]: protocol xml file containing all the parameters
 ** <span style="color:green">'''Result Note'''</span> [<span style="color:orange">--resultNotesFile</span>] [<span style="color:pink">-n</span>]: result notes
 ** <span style="color:green">'''Output Folder'''</span> [<span style="color:orange">--outputFolder</span>] [<span style="color:pink">-f</span>]: DTIPrep creates the output folder via using both absolute path (starts with "/") and relative path. The realtive path does not start with "/". If the relative path ends with "/" means that the output folder will be created in current location, otherwise the output folder will be created in the same folder as dwi image.
 ** <span style="color:green">'''Create Default Protocol'''</span> [<span style="color:orange">--default</span>] [<span style="color:pink">-d</span>]: create default protocol xml file
 ** <span style="color:green">'''Check by Protocol'''</span> [<span style="color:orange">--check</span>] [<span style="color:pink">-c</span>]: check by protocol xml file. Default operation
+|[[Image:GUI.png|thumb|280px|User Interface]]
 |}
 ==More Information==

@@ Line 40: / Line 40: @@
-== More Information ==
+==More Information==
 ===Acknowledgment===
- This work is part of the National Alliance for Medical Image Computing NAMIC, the IBIS (Infant Brain Imaging Study) Network which is NIH funded Autism Center of Excellence (HDO55741) and additional support is provided by the following grants: NIH grants P50 MH 064065, MH070890, P30 HD03110, R01 MH091645, U54 EB005149-01 (NA-MIC) , R01 NS061965, as well as by the Track-HD project funded by the CHDI/High Q Foundation.
+This work is part of the National Alliance for Medical Image Computing NAMIC, the IBIS (Infant Brain Imaging Study) Network which is NIH funded Autism Center of Excellence (HDO55741) and additional support is provided by the following grants: NIH grants P50 MH 064065, MH070890, P30 HD03110, R01 MH091645, U54 EB005149-01 (NA-MIC) , R01 NS061965, as well as by the Track-HD project funded by the CHDI/High Q Foundation.
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