Documentation/Labs/Surface Toolbox update - Revision history

Benwilson: Update WIP Modules and show implemented modules

2019-07-30T12:14:06Z

Update WIP Modules and show implemented modules

Benwilson: Describing which functions are being worked on.

2019-07-26T12:10:27Z

Describing which functions are being worked on.

JChris.FillionR: /* Path forward */

2019-06-25T19:30:15Z

Path forward

Styner: Added my (styner) input on surface toolbox

2019-06-10T19:34:46Z

Added my (styner) input on surface toolbox

Bpaniagua: /* Initial discussions */

2019-06-10T15:11:09Z

Initial discussions

Bpaniagua: /* Team */

2019-05-29T20:25:20Z

Team

JChris.FillionR: /* Current MeshMath functionality */

2019-05-29T20:21:00Z

Current MeshMath functionality

Show changes

JChris.FillionR: /* Current MeshMath functionality */

2019-05-29T20:17:41Z

Current MeshMath functionality

Bpaniagua: /* Team */

2019-05-29T20:12:27Z

Team

Bpaniagua at 20:12, 29 May 2019

2019-05-29T20:12:06Z

@@ Line 63: / Line 63: @@
 | SingleMesh
 | {{Done}}
-| (Work in Progress)
+| (Implemented)
 |-
 | avgMesh
@@ Line 69: / Line 69: @@
 | MultipleMesh
 | {{Done}}
+| (Work in Progress)
 |-
 | ave
@@ Line 219: / Line 219: @@
 | SingleMesh
 | {{Done}}
-| (Work in Progress)
+| (Implemented)
 |-
 | isOpen
@@ Line 291: / Line 291: @@
 | SingleMesh
 | {{Done}}
+| (Work in Progress)
 |-
 | closestPoint
@@ Line 321: / Line 321: @@
 | SingleMesh
 | {{Done}}
-| (Work in Progress) Check with @lasso to see if this is already included into the Surface toolbox
+| (Implemented) Check with @lasso to see if this is already included into the Surface toolbox
 |-
 | decimateMesh
@@ Line 345: / Line 345: @@
 | SingleMesh
 | {{Done}}
-| (Work in Progress)
+| (Implemented)
 |-
 | lookupPointData

@@ Line 63: / Line 63: @@
 | SingleMesh
 | {{Done}}
+| (Work in Progress)
 |-
 | avgMesh
@@ Line 105: / Line 105: @@
 | SingleMesh
 | {{Done}}
+| (Work in Progress)
 |-
 | meshValues
@@ Line 111: / Line 111: @@
 | SingleMesh
 | {{Done}}
-| Export through CSV
+| (Work in Progress) Export through CSV
 |-
 | avgGaussMesh
@@ Line 153: / Line 153: @@
 | SingleMesh
 | {{Done}}
-| Turn into "import from file" or something similar. This new operation would import a scalar field from a csv file into a mesh
+| (Work in Progress) Turn into "import from file" or something similar. This new operation would import a scalar field from a csv file into a mesh
 |-
 | subKWM
@@ Line 201: / Line 201: @@
 | SingleMesh
 | {{Done}}
+| (Work in Progress)
 |-
 | avg/median/min/max/per1/per99OneKWM
@@ Line 213: / Line 213: @@
 | SingleMesh
 | {{Done}}
-| Slight change it should close all the open holes until there are no more
+| (Work in Progress) Slight change it should close all the open holes until there are no more
 |-
 | BordersOut
@@ Line 219: / Line 219: @@
 | SingleMesh
 | {{Done}}
+| (Work in Progress)
 |-
 | isOpen
@@ Line 255: / Line 255: @@
 | SingleMesh
 | {{Done}}
-| Keep with modifications, the scalar field can be input in a csv, it does not need to be a KWM file
+| (Work in Progress) Keep with modifications, the scalar field can be input in a csv, it does not need to be a KWM file
 |-
 | FSAscData
@@ Line 267: / Line 267: @@
 | SingleMesh
 | {{Done}}
-| Keep with modifications, we should create an option to extract vtkMassProperties from a single Mesh including surface area and volume
+| (Work in Progress) Keep with modifications, we should create an option to extract vtkMassProperties from a single Mesh including surface area and volume
 |-
 | variance/mean/attSTD
@@ Line 279: / Line 279: @@
 | SingleMesh
 | {{Done}}
-| Keep with modifications, embed the attributes as scalar fields in the mesh
+| (Work in Progress) Keep with modifications, embed the attributes as scalar fields in the mesh
 |-
 | particleConsistency
@@ Line 303: / Line 303: @@
 | SingleMesh
 | {{Done}}
-| Keep with modifications. Provide a point and a scalar field and values for that point will be output
+| (Work in Progress) Keep with modifications. Provide a point and a scalar field and values for that point will be output
 |-
 | cart2bary
@@ Line 321: / Line 321: @@
 | SingleMesh
 | {{Done}}
-| Check with @lasso to see if this is already included into the Surface toolbox
+| (Work in Progress) Check with @lasso to see if this is already included into the Surface toolbox
 |-
 | decimateMesh
@@ Line 339: / Line 339: @@
 | SingleMesh
 | {{Done}}
+| (Work in Progress)
 |-
 | translateMesh
@@ Line 345: / Line 345: @@
 | SingleMesh
 | {{Done}}
+| (Work in Progress)
 |-
 | lookupPointData
@@ Line 351: / Line 351: @@
 | SingleMesh
 | {{Done}}
+| (Work in Progress)
 |-
 | volumePolyData
@@ Line 357: / Line 357: @@
 | SingleMesh
 | {{Done}}
-| Keep altogether with the surface area functionality described above (vtkMassProperties)
+| (Work in Progress) Keep altogether with the surface area functionality described above (vtkMassProperties)
 |}

@@ Line 361: / Line 361: @@
 === Path forward ===
 == Testing data ==
 TBD

@@ Line 260: / Line 260: @@
 | Extracts a curvature/thickness etc information from a FreeSurfer style scalar file and adds it as attribute to the vtk mesh for visualization. FS format is line-by-line, no header, with each line 'point-id vertex-x vertex-y vertex-z scalar-prop
 | SingleMesh
-| {{Done}}
+| {{Not Done}}
-| Check in with @styner to see if he can provide data to test this, or if he wants to keep it
+| Needs to be replaced by a conversion tool that allows VTK/Slicer and GIFTI (the new surface standard that FS is using with their newest versions, connectome projects are using only GIFTI)
 |-
 | surfaceArea
@@ Line 309: / Line 309: @@
 | SingleMesh
 | {{Done}}
-| Keep with modifications. Check in with @styner
+| Keep with modifications. (styner: I think this can be removed)
 |-
 | VTKtoLpts

← Older revision		Revision as of 15:11, 10 June 2019
Line 27:		Line 27:

	We will be potentially implementing individual CLIs for each functionality in MeshMath, and those will be plugged into the Surface Toolbox.		We will be potentially implementing individual CLIs for each functionality in MeshMath, and those will be plugged into the Surface Toolbox.
		+
		+	We would like to add a parameter node so if you save the scene and reload then all the node and parameter selections that you have made are not lost
		+	Enclose all functionality in C++ little CLIs that can be called from the python infrastructure, so they can be used from any modules
		+	Do the same thing for the functionality in MeshMath, creating independent CLIs and modules

	=== Current MeshMath functionality ===		=== Current MeshMath functionality ===

@@ Line 11: / Line 11: @@
 * Andras Lasso
 * Martin Styner
-* TBD engineer
+* Benjamin Wilson (Kitware Summer intern 2019)
 == Definitions ==

@@ Line 30: / Line 30: @@
 === Current MeshMath functionality ===
-{| class="wikitable"
+{| class="wikitable sortable"
 ! Name
 ! Description

@@ Line 264: / Line 264: @@
 | Keep with modifications, we should create an option to extract vtkMassProperties from a single Mesh including surface area and volume
 |-
-| -variance
+| -variance/mean/attSTD
 |  Compute variance across population of scalar fields
 | Multiple MeshScalar (multiple Mesh)
@@ Line 281: / Line 281: @@
 | {{Not Done}}
 | ShapeWorks functionality, do not keep
 |}
 === Path forward ===