Alexy: /* Code branch on github */

2013-12-10T22:31:25Z

Code branch on github

Alexy at 22:31, 10 December 2013

2013-12-10T22:31:00Z

Alexy: Created page with '= Motivation: current state of non-linear transforms in Slicer 4.2 = Slicer 4.2 has a very limited non-linear transforms support. * MRML nodes exist for BSpline and Grid transf…'

2013-12-10T15:28:13Z

Created page with '= Motivation: current state of non-linear transforms in Slicer 4.2 = Slicer 4.2 has a very limited non-linear transforms support. * MRML nodes exist for BSpline and Grid transf…'

New page

= Motivation: current state of non-linear transforms in Slicer 4.2 =

Slicer 4.2 has a very limited non-linear transforms support.

* MRML nodes exist for BSpline and Grid transforms
* There is a number of CLI modules that input and output non-linear transforms
* There is no support for import/export of non-linear transforms
* There is no support in Data module for applying non-linear transforms by dragging Volumes and Models
* There is no support in Data module for hardening of non-linear transforms for Volumes and Models
* CLI modules input and output "resampling" transform, which transforms from parent space, where linear transforms are stored as "modeling" transforms, which transforms to parent space

= New features implemented in this project =

* Support for import/export of non-linear transforms
* Support in Data module for applying non-linear transforms by dragging Volumes and Models
* Support in Data module for hardening of non-linear transforms for Volumes and Models
* Support for both "to parent" and "from parent" types of transforms in MRML nodes (both linear and non-linear)
* Support for both "to world" and "from world" types of transforms in MRML nodes (both linear and non-linear)
* Support for caching of "to parent" and "from parent" types of transforms in MRML nodes (both linear and non-linear)
* Maintain backward compatibility with existing CLI modules
= MRML API changes =
== vtkMRMLTransformNode ==
* new method virtual vtkGeneralTransform*GetTransformFromParent()
* new method void GetTransformFromWorld(vtkGeneralTransform* transformToWorld)
* new flag vtkMRMLTransformNode::ReadWriteAsTransformToParent which tells storage nodes wheather to read/write transform data as from parent or to parent. The flag is implemented in vtkMRMLTransformNode to maintain backward compatibility with CLI modules that read/write non-linear transforms as “resampling” , from parent space transforms.
== vtkMRMLLinearTransformNode ==
* changed signature of the method virtual void GetMatrixTransformToParent(vtkMatrix4x4*)
* new method virtual void GetMatrixTransformFromParent(vtkMatrix4x4*);
* new method void SetAndObserveMatrixTransformFromParent(vtkMatrix4x4 *matrix);
== vtkMRMLNonlinearTransformNode ==
* changed signature of the method virtual void GeWarpTransformToParent(vtkWarpTransform*)
* new method virtual void GeWarpTransformFromParent(vtkWarpTransform*);
* new method void SetAndObserveWarpTransformFromParent(vtkWarpTransform*matrix);
== Other MRML nodes ==
* implemented above APIs in vtkMRMLBSplineTransformNode and vtkMRMLGridTransformNode
* added support for applying transforms (hardening) to Volume and Model nodes
= Support for dragging under non-linear transforms in Data module =
* vtkMRMLSliceLayerLogic class has been redesigned to deal with generic transforms rather than just vtkMatrix4x4
* vtkMRMLModelDisplayableManager class has been redesigned to deal with generic transforms rather than just vtkMatrix4x4

@@ Line 38: / Line 38: @@
 * vtkMRMLSliceLayerLogic class has been redesigned to deal with generic transforms rather than just vtkMatrix4x4
 * vtkMRMLModelDisplayableManager class has been redesigned to deal with generic transforms rather than just vtkMatrix4x4
-== Code branch on github ==
+= Code branch on github =
 https://github.com/ayarmarkovich/Slicer/tree/xform_branch

← Older revision		Revision as of 22:31, 10 December 2013
Line 38:		Line 38:
	* vtkMRMLSliceLayerLogic class has been redesigned to deal with generic transforms rather than just vtkMatrix4x4		* vtkMRMLSliceLayerLogic class has been redesigned to deal with generic transforms rather than just vtkMatrix4x4
	* vtkMRMLModelDisplayableManager class has been redesigned to deal with generic transforms rather than just vtkMatrix4x4		* vtkMRMLModelDisplayableManager class has been redesigned to deal with generic transforms rather than just vtkMatrix4x4
		+	== Code branch on github ==
		+	https://github.com/ayarmarkovich/Slicer/tree/xform_branch

Documentation/Labs/NonlinearTransforms - Revision history

Alexy: /* Code branch on github */

Alexy at 22:31, 10 December 2013

Alexy: Created page with '= Motivation: current state of non-linear transforms in Slicer 4.2 = Slicer 4.2 has a very limited non-linear transforms support. * MRML nodes exist for BSpline and Grid transf…'