Documentation/Labs/DeprecatedModules - Revision history

Grundlett: Text replacement - "https?:\/\/(?:www|wiki)\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) " to "https://www.slicer.org/wiki/$1 "

2019-11-27T13:19:46Z

Text replacement - "https?:\/\/(?:www|wiki)\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) " to "https://www.slicer.org/wiki/$1 "

JChris.FillionR: /* Modules */

2014-08-20T22:01:34Z

Modules

JChris.FillionR: /* Modules */

2014-08-20T21:58:07Z

Modules

JChris.FillionR: /* Modules */

2014-08-20T21:57:23Z

Modules

JChris.FillionR: /* Modules */

2014-06-30T13:30:21Z

Modules

JChris.FillionR at 13:29, 30 June 2014

2014-06-30T13:29:51Z

Ungi: /* Modules */

2014-05-30T21:57:21Z

Modules

JChris.FillionR: /* Issues */

2014-03-28T14:25:25Z

Issues

JChris.FillionR at 00:18, 10 April 2013

2013-04-10T00:18:27Z

JChris.FillionR: /* Possible approach */

2013-04-10T00:17:07Z

Possible approach

@@ Line 18: / Line 18: @@
 I propose to include all the module belonging to the CLI "Legacy" category:
-See also http://www.slicer.org/slicerWiki/index.php/Developer_Meetings/20130226#Listing_of_Modules
+See also https://www.slicer.org/wiki/Developer_Meetings/20130226#Listing_of_Modules * <s>AffineRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
 * <s>BSplineDeformableRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
 * <s>LinearRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]

@@ Line 22: / Line 22: @@
 * <s>AffineRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
 * <s>BSplineDeformableRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
 * <s>LinearRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
 * <s>MultiResolutionAffineRegistration</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
@@ Line 31: / Line 27: @@
 * <s>OtsuThresholdSegmentation</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
 * ResampleScalarVolume => Essential feature (typically high-resolution data is downsampled with this filter to conserve memory and increase execution speed; e.g., for registration), don't remove without replacement (or at least don't put it in an extension that collects useless modules only)
-* RigidRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)
+* <s>RigidRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
 * <s>MRIBiasFieldCorrection => Essential feature for MRI registration, don't remove without replacement (or at least don't put it in an extension that collects useless modules only)</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]. Jc: Checking with Hans and Steve what it would take to port to module to ITKv4
 ** There is this module that is more up to date and arguable is more easy to use: http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/N4ITKBiasFieldCorrection. This module remains in the main application.
 * <s>MIDASApplications</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23396 r23396]
 * <s>BatchMakeApplications</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23396 r23396]
 = Links =

@@ Line 20: / Line 20: @@
 See also http://www.slicer.org/slicerWiki/index.php/Developer_Meetings/20130226#Listing_of_Modules
-* <s>AffineRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
+* <s>AffineRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
-* <s>BSplineDeformableRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
+* <s>BSplineDeformableRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
 * BSplineToDeformationField  => Needed by EMSegment; very useful in general, as the BSpline transform is not usable by external programs, but the conversion result (deformation field) can be processed and visualized in ParaView etc.
 * DiffusionTensorTest
 * ExpertAutomatedRegistration => Needed by TubeTK. - Can it be replaced by BRAINS?
 * FiducialRegistration  => Replaced by Landmark Registration module and Fiducial Registration Wizard (in SlicerIGT extension)? Therefore, probably not used anymore?
-* <s>LinearRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
+* <s>LinearRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
-* <s>MultiResolutionAffineRegistration</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
+* <s>MultiResolutionAffineRegistration</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
-* <s>OtsuThresholdImageFilter</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
+* <s>OtsuThresholdImageFilter</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
-* <s>OtsuThresholdSegmentation</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
+* <s>OtsuThresholdSegmentation</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
 * ResampleScalarVolume => Essential feature (typically high-resolution data is downsampled with this filter to conserve memory and increase execution speed; e.g., for registration), don't remove without replacement (or at least don't put it in an extension that collects useless modules only)
 * RigidRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)
 * TestGridTransformRegistration
-* <s>MRIBiasFieldCorrection => Essential feature for MRI registration, don't remove without replacement (or at least don't put it in an extension that collects useless modules only)</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]. Jc: Checking with Hans and Steve what it would take to port to module to ITKv4
+* <s>MRIBiasFieldCorrection => Essential feature for MRI registration, don't remove without replacement (or at least don't put it in an extension that collects useless modules only)</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]. Jc: Checking with Hans and Steve what it would take to port to module to ITKv4
 ** There is this module that is more up to date and arguable is more easy to use: http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/N4ITKBiasFieldCorrection. This module remains in the main application.

@@ Line 20: / Line 20: @@
 See also http://www.slicer.org/slicerWiki/index.php/Developer_Meetings/20130226#Listing_of_Modules
-* AffineRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)
+* <s>AffineRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
-* BSplineDeformableRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)
+* <s>BSplineDeformableRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
 * BSplineToDeformationField  => Needed by EMSegment; very useful in general, as the BSpline transform is not usable by external programs, but the conversion result (deformation field) can be processed and visualized in ParaView etc.
 * DiffusionTensorTest
 * ExpertAutomatedRegistration => Needed by TubeTK. - Can it be replaced by BRAINS?
 * FiducialRegistration  => Replaced by Landmark Registration module and Fiducial Registration Wizard (in SlicerIGT extension)? Therefore, probably not used anymore?
-* LinearRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)
+* <s>LinearRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
-* MultiResolutionAffineRegistration
+* <s>MultiResolutionAffineRegistration</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
-* OtsuThresholdImageFilter
+* <s>OtsuThresholdImageFilter</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
-* OtsuThresholdSegmentation
+* <s>OtsuThresholdSegmentation</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]
 * ResampleScalarVolume => Essential feature (typically high-resolution data is downsampled with this filter to conserve memory and increase execution speed; e.g., for registration), don't remove without replacement (or at least don't put it in an extension that collects useless modules only)
 * RigidRegistration (it's just a simple registration example, BRAINS registration provides all its functionality)
 * TestGridTransformRegistration
-* MRIBiasFieldCorrection => Essential feature for MRI registration, don't remove without replacement (or at least don't put it in an extension that collects useless modules only)
+* <s>MRIBiasFieldCorrection => Essential feature for MRI registration, don't remove without replacement (or at least don't put it in an extension that collects useless modules only)</s> Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23599 r23599]. Jc: Checking with Hans and Steve what it would take to port to module to ITKv4
 ** There is this module that is more up to date and arguable is more easy to use: http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/N4ITKBiasFieldCorrection. This module remains in the main application.

@@ Line 37: / Line 37: @@
 Are the following modules used:
-* MIDASApplications {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23396 r23396]
+* <s>MIDASApplications</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23396 r23396]
-* BatchMakeApplications {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23396 r23396]
+* <s>BatchMakeApplications</s> {{done}} Removed in [http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23396 r23396]
 = Links =

← Older revision		Revision as of 14:25, 28 March 2014
Line 45:		Line 45:

	= Issues =		= Issues =
		+	* http://na-mic.org/Mantis/view.php?id=3401

← Older revision		Revision as of 00:18, 10 April 2013
Line 39:		Line 39:
	* MIDASApplications		* MIDASApplications
	* BatchMakeApplications		* BatchMakeApplications
		+
		+	= Links =
		+
		+	Mailing list thread: http://slicer-devel.65872.n3.nabble.com/Listing-of-Modules-in-Slicer-tp4027711p4027723.html
		+
		+	= Issues =

@@ Line 1: / Line 1: @@
 This page is here to capture the list of modules we would like to bundle into a Slicer extension named "DeprecatedModules".
-= Possible approach =
+= Action plan =
-) Then, a git repository named "DeprecatedModulesExtension" could combine them using the "git submodule" approach".
+All these modules would be added to their own git repository:
 ) The concept of meta extension could be introduced (similar to what is down with apt-get), the extension would appear in the catalog and would simply allow to install all its dependent extensions.