https://www.slicer.org/w/index.php?action=history&feed=atom&title=Documentation%2F4.8%2FExtensions%2FSliceTrackerDocumentation/4.8/Extensions/SliceTracker - Revision history2026-05-07T02:02:57ZRevision history for this page on the wikiMediaWiki 1.33.0https://www.slicer.org/w/index.php?title=Documentation/4.8/Extensions/SliceTracker&diff=55247&oldid=prevUpdateBot: Nightly -> 4.82017-10-18T07:02:02Z<p>Nightly -> 4.8</p>
<p><b>New page</b></p><div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{|<br />
|<br />
[[Image:SliceTracker_Logo_1.0_128x128.png]]<br />
|<br />
Extension: [[Documentation/{{documentation/version}}/Extensions/SliceTracker|SliceTracker]]<br><br />
Acknowledgments:<br />
This work is supported in part by the National Cancer Institute and the National Institute of Biomedical Imaging and Bioengineering of the National Institutes of Health through the following grants:<br />
* [http://igtpg.spl.harvard.edu/ Enabling technologies for MRI-guided prostate interventions] (R01 CA111288, PI Tempany)<br />
* [http://ncigt.org/ The National Center for Image-Guided Therapy] (P41 EB015898, PI Tempany)<br />
* [http://qiicr.org Quantitative Image Informatics for Cancer Research (QIICR)] (U24 CA180918, PIs Kikinis and Fedorov).<br><br />
Contributors: Christian Herz ({{collaborator|name|spl}}), Peter Behringer ({{collaborator|name|spl}}), Andrey Fedorov ({{collaborator|name|spl}})<br><br />
Contact: Andrey Fedorov, <email>andrey.fedorov@gmail.com</email><br><br />
<br />
License: [http://www.slicer.org/pages/LicenseText Slicer License]<br />
|}<br />
<br />
== ''NOTE: SliceTracker documentation is located here: https://slicerprostate.gitbooks.io/slicetracker'' ==<br />
<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|qiicr}}|{{collaborator|longname|qiicr}}<br />
|{{collaborator|logo|spl}}|{{collaborator|longname|spl}}<br />
|{{collaborator|logo|ncigt}}|{{collaborator|longname|ncigt}}<br />
}}<br />
<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/extension-section|Extension Description}}<br />
<br />
Slicetracker is a 3D Slicer extension for tracking prostate motion during MR-guided prostate biopsies. It implements registration of the pre-procedural to intra-procedural images, which aims to improve reliability of biopsy target re-identification.<br />
<br />
Furthermore, a so called z-Frame registration module is included for correlating the patient and 3D Slicers coordinate system. For guidance of the needle a template grid with 15x14 holes is placed in front of the z-Frame. The optimal hole is computed for inserting the needle and obtaining the tissue sample.<br />
<br />
<br />
[[File:Slicetracker.gif]]<br />
<br />
{{documentation/{{documentation/version}}/extension-section|References}}<br />
[1] Fedorov A., Tuncali K., Fennessy FM., Tokuda J., Hata N., Wells WM., Kikinis R., Tempany CM. 2012. Image registration for targeted MRI-guided transperineal prostate biopsy. Journal of magnetic resonance imaging: JMRI 36:987–992. DOI: 10.1002/jmri.23688.<br />
<br />
[2] Fedorov A., Tuncali K., Penzkofer T., Tokuda J., Song S-E., Hata N., Tempany C. 2013. Quantification of intra-procedural gland motion during transperineal MRI-guided prostate biopsy. In: Proc. of ISMRM’13.<br />
<br />
[3] Tokuda J., Tuncali K., Iordachita I., Song S-EE., Fedorov A., Oguro S., Lasso A., Fennessy FM., Tempany CM., Hata N. 2012. In-bore setup and software for 3T MRI-guided transperineal prostate biopsy. Physics in medicine and biology 57:5823–5840. DOI: 10.1088/0031-9155/57/18/5823.<br />
<br />
[4] Behringer P., Herz C., Penzkofer T., Tuncali K., Tempany C., Fedorov A. 2015. Open-source Platform for Prostate Motion Tracking during in-bore Targeted MRI-guided Biopsy. In: MICCAI Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging. DOI: 10.1007/978-3-319-31808-0_15.<br />
<br />
[5] https://blog.kitware.com/clinical-research-employs-3d-slicer-extension/<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br />
* Source code on github: https://github.com/SlicerProstate/SliceTracker<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
[[Category:Documentation/{{documentation/version}}/Modules/Informatics]]<br />
<!-- ---------------------------- --></div>UpdateBot