Documentation/4.8/Extensions/ShapeRegressionExtension - Revision history

Lpascal at 21:29, 6 February 2018

2018-02-06T21:29:16Z

Lpascal at 15:43, 31 January 2018

2018-01-31T15:43:17Z

Lpascal at 23:21, 30 January 2018

2018-01-30T23:21:17Z

Lpascal: Created page with "{{documentation/versioncheck}} {{documentation/{{documentation/version}}/module-header}}

@@ Line 57: / Line 57: @@
 * A folder containing the input shapes. The user would then have to specify the parameters associated to each input shape. A CSV file (''CSVInputshapeparameters.csv'') containing all these information will be automatically created in the output folder specified by the user.
 * A CSV files containing in each row the input shape file path followed by the shape parameters "Time Point" , "Sigma W" , "Tris" and "Weight" .
-[[Image:RegressionComputation-ExampleInputShapeParametersCSVfile.png|500px|thumb|center|Example of CSV files]]
+[[Image:RegressionComputation-ExampleInputShapeParametersCSVfile.png|500px|thumb|center|Example of RegressionComputation Input CSV file]]
 |}
@@ Line 91: / Line 91: @@
 |[[Image:RegressionComputation-OptimalParameters.png|thumb|500px|Regression Computation Optimal Parameters]]
 |This section allows the user to specify:
-* the optimal method used by Shape4D CLI
+* The optimal method used by Shape4D CLI
 * The minimum distance that will stopped the shape regression process
 * The maximum number of iteration
@@ Line 109: / Line 109: @@
 * The input directory which should contain the time-regressed shape sets computed by RegressionComputation module
 * The rootname of the time-regressed shape set that should be ''<prefix>_iter_n_time_'' with:
-** the prefix specified by the user in the RegressionComputation module
+** The prefix specified by the user in the RegressionComputation module
 **  n the iteration number of the shape regression process that the user want to visualize (''iter_n'' will be replaced by ''final'' if the user wants to display the final results computed)
 |}
@@ Line 132: / Line 132: @@
 |[[Image:RegressionVisualization-RegressionPlot.png|thumb|500px|Regression Plot]]
 | To do so, the user will have to specify the path of a CSV file containing the following information used to compute the set of time-regressed shapes in RegressionComputation module:
-* the path of each input shape
+* The path of each input shape
-* the time-point associated
+* The time-point associated
 |[[Image:BrainModelVolume_RegressionPlot.png|200px|thumb|center|Example of Regression Plot]]
 |}

@@ Line 74: / Line 74: @@
 {|
-Shape4D CLI will compute several sets of time-regressed shapes where the basename of each shape will be: ''<prefix>_n_time_00i'' with:
+Shape4D CLI will compute several sets of time-regressed shapes where the basename of each shape will be: ''<prefix>_iter_n_time_00i'' with:
 *<prefix>: the prefix can be specified by the user
 * n: the iteration number of the shape regression process (i.e. represents the number of the time-regressed shape serie)
@@ Line 108: / Line 108: @@
 | In order to do that, the user would have to specify:
 * The input directory which should contain the time-regressed shape sets computed by RegressionComputation module
-* The rootname of the time-regressed shape set that should be ''<prefix>_n_time_'' with:
+* The rootname of the time-regressed shape set that should be ''<prefix>_iter_n_time_'' with:
 ** the prefix specified by the user in the RegressionComputation module
-**  n the iteration number of the shape regression process that the user want to visualize (n will be ''final'' if the user wants to display the final results computed)
+**  n the iteration number of the shape regression process that the user want to visualize (''iter_n'' will be replaced by ''final'' if the user wants to display the final results computed)
 |}

@@ Line 29: / Line 29: @@
 * RegressionVisualization:
 ** Plotting of the time-regressed shape volume evolution according to a linear variable
-** Visualization of the sequence of the time-regressed shapes generated (using [https://www.slicer.org/wiki/Documentation/Nightly/Extensions/Sequences Sequences] module)
+** Visualization of the sequence of the time-regressed shapes generated (using [[Documentation/{{documentation/version}}/Extensions/Sequences|Sequences]] module)
 <!-- ---------------------------- -->
@@ Line 98: / Line 98: @@
 ==Regression Visualization Module==
-This module allows to easily visualize the results obtained by the RegressionComputation module by using severals slicer extensions ([https://www.slicer.org/wiki/Documentation/Nightly/Extensions/Sequences Sequences], [https://www.slicer.org/wiki/Documentation/4.8/Modules/Colors Colors], [https://www.slicer.org/wiki/Documentation/Nightly/Modules/Tables Tables]).
+This module allows to easily visualize the results obtained by the RegressionComputation module by using severals slicer extensions ([[Documentation/{{documentation/version}}/Extensions/Sequences|Sequences]], [[Documentation/{{documentation/version}}/Modules/Colors|Colors]], [[Documentation/{{documentation/version}}/Modules/Tables|Tables]]).