https://www.slicer.org/w/index.php?action=history&feed=atom&title=Documentation%2F4.8%2FExtensions%2FCardiacMRIToolkitDocumentation/4.8/Extensions/CardiacMRIToolkit - Revision history2026-04-04T20:39:51ZRevision history for this page on the wikiMediaWiki 1.33.0https://www.slicer.org/w/index.php?title=Documentation/4.8/Extensions/CardiacMRIToolkit&diff=55202&oldid=prevUpdateBot: Nightly -> 4.82017-10-18T07:01:32Z<p>Nightly -> 4.8</p>
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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
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This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br><br />
Authors: Alan Morris, Umme Salma Bengali, CARMA Center, University of Utah<br><br />
Contributors: Greg Gardner, Josh Cates, Rob MacLeod, Eugene Kholmovski, CARMA Center, University of Utah<br> <br />
Contacts: Alan Morris: <email>alan.morris@carma.utah.edu</email>, Salma Bengali: <email>salma.bengali@carma.utah.edu</email><br><br />
Website: [http://capulet.med.utah.edu/namic/cmrslicer/ Slicer CMR Toolkit] <br> [http://carmacenter.org http://carmacenter.org] <br><br />
[http://www.na-mic.org/Wiki/index.php/DBP3:Utah http://www.na-mic.org/Wiki/index.php/DBP3:Utah]<br />
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{{documentation/{{documentation/version}}/extension-section|Extension Description}}<br />
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The Cardiac MRI Toolkit extension consists of several modules that can be used in the analysis of cardiac LGE-MRI images for the purpose of studying cardiac arrhythmia. <br />
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*[[Documentation/{{documentation/version}}/Modules/SlicerModuleCMRToolkitWizard|CMR Toolkit Wizard]]<br />
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleInhomogeneity|Automatic Cardiac MRI Inhomogeneity Correction Filter]]<br />
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleAutoScar|Automatic Left Atrial (Post-ablation) Scar Detection]]<br />
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleCardiacRegistration|Cardiac MRI Registration]]<br />
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleCardiacRegistrationBRAINSFit|Cardiac MRI Registration Using BRAINSFit]]<br />
*[[Documentation/{{documentation/version}}/Modules/SlicerModulePVAntrumCut|PV Antrum Cut Filter]]<br />
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleAxialDilate|2D Axial Dilate Filter]]<br />
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleBooleanRemove|Boolean REMOVE Filter]]<br />
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleThresholdModel|Scar Visualization]]<br />
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleIsolatedConnected|Isolated Connected Image Filter]]<br />
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleConnectedThreshold|Connected Threshold Image Filter]]<br />
*[[Documentation/{{documentation/version}}/Modules/AutomatedLASegmentation|Automated LA Segmentation]]<br />
*[[Documentation/{{documentation/version}}/Modules/LASegmentationWorkflow|LA Segmentation Workflow]]<br />
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*Sample data:<br />
** Sixty anonymized datasets containing LGE-MRI image data and segmentations of the left atrium from patients with atrial fibrillation: [http://hdl.handle.net/1926/1755 Pre and Post Radiofrequency Ablation LGE-MRI Collection]<br />
** Sixty segmentation datasets of the left atrium from patients with atrial fibrillation who have undergone radiofrequency catheter ablation for treatment: [http://hdl.handle.net/1926/1764 CARMA Longitudinal Left Atrial Shape Data]<br />
* Automatic scar detection from cardiac LGE-MRI scans<br />
* Segmentation of the heart<br />
* Cardiac LGE-MRI image registration<br />
* Various operations on segmentation masks<br />
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*[[Media: Cardiac_MRI_Toolkit_Tutorial_Summer2013.pptx|Cardiac MRI Toolkit Tutorial]]<br />
*[http://wiki.na-mic.org/Wiki/index.php/File:CMRToolkit_SummerTutorialContest2013_Videos_Part1.zip Tutorial Videos Part 1]<br />
*[http://wiki.na-mic.org/Wiki/index.php/File:CMRToolkit_SummerTutorialContest2013_Videos_Part2.zip Tutorial Videos Part 2]<br />
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The source code for this extension can be found at the [https://github.com/carma-center/carma_slicer_extension/ CARMA GitHub repository].<br />
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