https://www.slicer.org/w/index.php?action=history&feed=atom&title=Documentation%2F4.6%2FExtensions%2FSliceTracker Documentation/4.6/Extensions/SliceTracker - Revision history 2026-04-28T20:58:08Z Revision history for this page on the wiki MediaWiki 1.33.0 https://www.slicer.org/w/index.php?title=Documentation/4.6/Extensions/SliceTracker&diff=53826&oldid=prev Criskross: uploaded new SliceTracker logo including NCIGT logo 2017-08-02T15:47:22Z <p>uploaded new SliceTracker logo including NCIGT logo</p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 15:47, 2 August 2017</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l10" >Line 10:</td> <td colspan="2" class="diff-lineno">Line 10:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; 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font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[Image:SliceTracker_Logo_1.<del class="diffchange diffchange-inline">0_128x128</del>.png]]</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[Image:SliceTracker_Logo_1.<ins class="diffchange diffchange-inline">1_128x128</ins>.png]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Extension: [[Documentation/{{documentation/version}}/Extensions/SliceTracker|SliceTracker]]&lt;br&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Extension: [[Documentation/{{documentation/version}}/Extensions/SliceTracker|SliceTracker]]&lt;br&gt;</div></td></tr> </table> Criskross https://www.slicer.org/w/index.php?title=Documentation/4.6/Extensions/SliceTracker&diff=47490&oldid=prev UpdateBot: Nightly -> 4.6 2016-11-07T06:31:29Z <p>Nightly -&gt; 4.6</p> <p><b>New page</b></p><div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> {|<br /> |<br /> [[Image:SliceTracker_Logo_1.0_128x128.png]]<br /> |<br /> Extension: [[Documentation/{{documentation/version}}/Extensions/SliceTracker|SliceTracker]]&lt;br&gt;<br /> Acknowledgments:<br /> This work is supported in part by the National Cancer Institute and the National Institute of Biomedical Imaging and Bioengineering of the National Institutes of Health through the following grants:<br /> * [http://igtpg.spl.harvard.edu/ Enabling technologies for MRI-guided prostate interventions] (R01 CA111288, PI Tempany)<br /> * [http://ncigt.org/ The National Center for Image-Guided Therapy] (P41 EB015898, PI Tempany)<br /> * [http://qiicr.org Quantitative Image Informatics for Cancer Research (QIICR)] (U24 CA180918, PIs Kikinis and Fedorov).&lt;br&gt;<br /> Contributors: Christian Herz ({{collaborator|name|spl}}), Peter Behringer ({{collaborator|name|spl}}), Andrey Fedorov ({{collaborator|name|spl}})&lt;br&gt;<br /> Contact: Andrey Fedorov, &lt;email&gt;andrey.fedorov@gmail.com&lt;/email&gt;&lt;br&gt;<br /> <br /> License: [http://www.slicer.org/pages/LicenseText Slicer License]<br /> |}<br /> <br /> == ''NOTE: SliceTracker documentation is located here: https://fedorov.gitbooks.io/slicetracker/content/'' ==<br /> <br /> {{documentation/{{documentation/version}}/module-introduction-logo-gallery<br /> |{{collaborator|logo|qiicr}}|{{collaborator|longname|qiicr}}<br /> |{{collaborator|logo|spl}}|{{collaborator|longname|spl}}<br /> |{{collaborator|logo|ncigt}}|{{collaborator|longname|ncigt}}<br /> }}<br /> <br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> <br /> Slicetracker is a 3D Slicer extension for tracking prostate motion during MR-guided prostate biopsies. It implements registration of the pre-procedural to intra-procedural images, which aims to improve reliability of biopsy target re-identification.<br /> <br /> Furthermore, a so called z-Frame registration module is included for correlating the patient and 3D Slicers coordinate system. For guidance of the needle a template grid with 15x14 holes is placed in front of the z-Frame. The optimal hole is computed for inserting the needle and obtaining the tissue sample.<br /> <br /> <br /> [[File:Slicetracker.gif]]<br /> <br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> [1] Fedorov A., Tuncali K., Fennessy FM., Tokuda J., Hata N., Wells WM., Kikinis R., Tempany CM. 2012. Image registration for targeted MRI-guided transperineal prostate biopsy. Journal of magnetic resonance imaging: JMRI 36:987–992. DOI: 10.1002/jmri.23688.<br /> <br /> [2] Fedorov A., Tuncali K., Penzkofer T., Tokuda J., Song S-E., Hata N., Tempany C. 2013. Quantification of intra-procedural gland motion during transperineal MRI-guided prostate biopsy. In: Proc. of ISMRM’13.<br /> <br /> [3] Tokuda J., Tuncali K., Iordachita I., Song S-EE., Fedorov A., Oguro S., Lasso A., Fennessy FM., Tempany CM., Hata N. 2012. In-bore setup and software for 3T MRI-guided transperineal prostate biopsy. Physics in medicine and biology 57:5823–5840. DOI: 10.1088/0031-9155/57/18/5823.<br /> <br /> [4] Behringer P., Herz C., Penzkofer T., Tuncali K., Tempany C., Fedorov A. 2015. Open-­source Platform for Prostate Motion Tracking during in­-bore Targeted MRI­-guided Biopsy. In: MICCAI Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging. DOI: 10.1007/978-3-319-31808-0_15.<br /> <br /> [5] https://blog.kitware.com/clinical-research-employs-3d-slicer-extension/<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> * Source code on github: https://github.com/SlicerProstate/SliceTracker<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-footer}}<br /> [[Category:Documentation/{{documentation/version}}/Modules/Informatics]]<br /> &lt;!-- ---------------------------- --&gt;</div> UpdateBot