JChris.FillionR at 20:41, 30 June 2016

2016-06-30T20:41:34Z

UpdateBot: Nightly -> 4.5

2015-11-12T22:16:23Z

Nightly -> 4.5

New page

<noinclude>{{documentation/versioncheck}}</noinclude>
*[[Documentation/{{documentation/version}}/FAQ|'''Slicer Registration FAQ''']]: answers to the most common questions/problems, including cookbook recipes for common registration steps.
*[[Documentation/{{documentation/version}}/RegistrationVideoTutorials|'''Slicer Registration Training Videos''']]: brief videos/screencasts showing step-by-step approaches to the most common tasks
*[[Documentation/{{documentation/version}}/Modules/Resampling|'''Slicer Resampling Overview''']] a summary of how 3DSlicer handles transforms and how image resampling is performed.]]

----

*[[Image:UnderConstruction.png|40px]]Please note this page is under construction and some cases/descriptions may be incomplete.

*case description, step by step instructions, screencasts: click on the thumbnail image,
*download image data: click on download link, which fetches .mrb file from MIDAS
*main module documentation: click on the link in the toolbox column.
*sort the table by a category: click on the sort icon in the column header
 

{| class="wikitable sortable labelpage labelpagetable" border="1"
|-
! ID
! scope="col" width="400px" |Description (click on image to access case page)
! Structure/Pathology
! Type of Registration
! Modality
! Download
|-
| align="center" | 1
|
{|
| [[Image:RegLib_C01_Thumb1.png|200px|lleft|RegLib C01: MR Meningioma|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C01]]
|Align baseline MR of meningioma with follow-up.
|}
| brain / tumor
| rigid+ affine
| MRI
|[http://slicer.kitware.com/midas3/download/?items=115233 '''RegLib_C01.mrb'''] (input data only , Slicer mrb file. 13 MB) 
|-
| align="center" | 2
|
{|
| [[Image:RegLib_C02_Thumb3.png|200px|lleft|RegLib C02: MR Meningioma|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C02]]
|Align MRI FLAIR with lesion segmentation to T1
|}
| multiple sclerosis
| affine
| MRI
|[http://slicer.kitware.com/midas3/download/?items=115374 '''RegLib_C02.mrb'''] (input data only , Slicer mrb file. 19 MB) 
[http://slicer.kitware.com/midas3/download/?items=115373 '''RegLib_C02_full.mrb'''] (input data + results, Slicer mrb file. 19 MB). 
|-
| align="center" | 3
|
{|
| [[Image:RegLib_C03_DTIVol_axial.png|200px|lleft|RegLib C03: DTI alignment|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C03]]
|Align DTI volume with structural reference scan (T2)
|}
| brain / tumor
| affine + nonrigid
| DTI
|[http://slicer.kitware.com/midas3/download/?items=95490 '''RegLib_C03.mrb'''] (input data only , Slicer mrb file. 50 MB) 
[http://slicer.kitware.com/midas3/download/?items=95491 '''RegLib_C03_full.mrb'''] (input data + results, Slicer mrb file. 108 MB). 
|-
| align="center" | 4
|
{|
| [[Image:RegLib_C04_Thumb1.jpg|200px|lleft|RegLib C04: MS longitudinal+multispectral|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C04]]
|Align both intra- and inter-exam MRI of a single subject.
|}
| brain / multiple sclerosis
| affine
| MRI
|[http://slicer.kitware.com/midas3/download/?items=116480 '''RegLib_C04.mrb'''] (input data only , Slicer mrb file. 19 MB) 
[http://slicer.kitware.com/midas3/download/?items=116479 '''RegLib_C04_full.mrb'''] (input data + results, Slicer mrb file. 19 MB). 
|-
| align="center" | 6
|
{|
| [[Image:RegLib_C06_Thumb0.png|200px|lleft|RegLib C06: Breast MRI pre/post|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C06]]
|Align pre- and post-Rx breast MRI
|}
| breast cancer
| affine+nonrigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=116852 '''RegLib_C06.mrb'''] (input data only , Slicer mrb file. 40 MB) 
[http://slicer.kitware.com/midas3/download/?items=116851 '''RegLib_C06_full.mrb'''] (input data + results, Slicer mrb file. 65 MB). 
|-
| align="center" | 7
|
{|
| [[Image:RegLib_C07_Thumb1.png|200px|lleft|RegLib C07: Prostate MRI pre/post|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C07]]
|Align baseline and follow-up prostate MRI
|}
| prostate cancer
| affine+nonrigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=116856 '''RegLib_C07.mrb'''] (input data only , Slicer mrb file. 8 MB) 
[http://slicer.kitware.com/midas3/download/?items=116855 '''RegLib_C07_full.mrb'''] (input data + results, Slicer mrb file. 27 MB). 
|-
| align="center" | 8
|
{|
| [[Image:RegLib_C07_Thumb1.png|200px|lleft|RegLib C08: abdominal PET-CT pre/post|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C08]]
|Align baseline and follow-up PET/CT pairs
|}
|
| affine+nonrigid
| PET CT
|[http://slicer.kitware.com/midas3/download/?items=116856 '''RegLib_C08.mrb'''] (input data only , Slicer mrb file. 8 MB) 
[http://slicer.kitware.com/midas3/download/?items=116855 '''RegLib_C08_full.mrb'''] (input data + results, Slicer mrb file. 27 MB). 
|-
| align="center" | 9
|
{|
| [[Image:RegLib_C09_Thumb2.png|200px|lleft|RegLib C09: fMRI to T1|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C09]]
|Align fMRI with structural MRI
|}
| brain
| rigid+nonrigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=116858 '''RegLib_C09.mrb'''] (input data only , Slicer mrb file. 40 MB) 
[http://slicer.kitware.com/midas3/download/?items=116857 '''RegLib_C09_full.mrb'''] (input data + results, Slicer mrb file. 182 MB). 
|-
| align="center" | 10
|
{|
| [[Image:RegLib_C10_Thumb2.png|200px|lleft|RegLib C10: Atlas to T1|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C10]]
|Align probabilistic/group atlas with T1
|}
| brain
| rigid+nonrigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=116868 '''RegLib_C10.mrb'''] (input data only , Slicer mrb file. 12 MB) 
[http://slicer.kitware.com/midas3/download/?items=116867 '''RegLib_C10_full.mrb'''] (input data + results, Slicer mrb file. 50 MB). 
|-
| align="center" | 12
|
{|
| [[Image:RegLib_C12_Thumb1.png|200px|lleft|RegLib C12: Abdominal MR-CT|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C12]]
|Align abdominal MRI with CT
|}
| liver tumor
| affine + nonrigid
| CT
|[http://slicer.kitware.com/midas3/download/?items=103749 '''RegLib_C12.mrb'''] (input data only , Slicer mrb file. 35 MB) 
[http://slicer.kitware.com/midas3/download/?items=103748 '''RegLib_C12_full.mrb'''] (input data + results, Slicer mrb file. 68 MB). 
|-
| align="center" | 14
|
{|
| [[Image:RegLib_C14_Thumb0.png|200px|lleft|RegLib C14: MR-PET|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C14]]
|Align brain PET with low-res MRI
|}
| brain
| affine + nonrigid
| CT
|[http://slicer.kitware.com/midas3/download/?items=103751'''RegLib_C14.mrb'''] (input data only , Slicer mrb file. 9 MB) 
[http://slicer.kitware.com/midas3/download/?items=103750 '''RegLib_C14_full.mrb'''] (input data + results, Slicer mrb file. 22 MB). 
|-
| align="center" | 15
|
{|
| [[Image:RegLib_C15_Thumb1.png|200px|lleft|RegLib C15: AC-PC|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C15]]
| AC-PC alignment of brain MRI
|}
| brain
| affine + nonrigid
| CT
|[http://slicer.kitware.com/midas3/download/?items=103755'''RegLib_C15.mrb'''] (input data only (incl. example fiducials) , Slicer mrb file. 22 MB) 
[http://slicer.kitware.com/midas3/download/?items=103754 '''RegLib_C15_full.mrb'''] (input data + results, Slicer mrb file. 22 MB). 
|-
| align="center" | 17
|
{|
| [[Image:RegLib_C17_Thumb1.png|200px|lleft|RegLib C17: Abdominal MR-CT|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C17]]
| Preop MRI to intraop interventional CT
|}
| abdominal
| affine
| CT
|[http://slicer.kitware.com/midas3/download/?items=115376 '''RegLib_C17.mrb'''] (input data only (incl. example fiducials) , Slicer mrb file. 10 MB) 
[http://slicer.kitware.com/midas3/download/?items=115375 '''RegLib_C17_full.mrb'''] (input data + results, Slicer mrb file. 12 MB). 
|-
| align="center" | 20
|
{|
| [[Image:RegLib_C20_Thumb1.png|200px|left|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C20]]
| Alignment of PET/CT follow-up to baseline
|}
| full body
| rigid + affine + nonrigid
| PET/CT
|[http://slicer.kitware.com/midas3/download/?items=116262 '''RegLib_C20.mrb'''] (input data only , Slicer mrb file. 76 MB) 
[http://slicer.kitware.com/midas3/download/?items=116261 '''RegLib_C20_full.mrb'''] (input data + results, Slicer mrb file. 171 MB). 
|-
| align="center" | 21
|
{|
| [[Image:RegLib_C21_Thumb1.png|200px|left|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C21]]
| Alignment of knee MRI (2 different subjects)
|}
| knee
| rigid + affine + nonrigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=115179 '''RegLib_C21.mrb'''] (input data + results, Slicer mrb file. 12 MB). 
|-
| align="center" | 27
|
{|
| [[Image:RegLib_C27_Thumb4.png|200px|left|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C27]]
| Alignment of DTI scan to structural reference T1-SPGR for surgical planning (tumor resection)
|}
| brain tumor
| affine + nonrigid
| DTI
|[http://slicer.kitware.com/midas3/download/?items=100678 '''RegLib_C27.mrb'''] (input data, Slicer mrb file 50MB) 
[http://slicer.kitware.com/midas3/download/?items=95493 '''RegLib_C27_full.mrb'''] (input data + results, Slicer mrb file 114MB) 
|-
| align="center" | 29
|
{|
| [[Image:RegLib_C29_Thumb.png|200px|left|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C29]]
|Alignment of DTI scan to structural reference T2/T1-SPGR for surgical planning (tumor resection)
|}
| brain tumor
| affine + nonrigid
| DTI
|[http://slicer.kitware.com/midas3/download/?items=95265 '''RegLib_C29_raw.mrb'''] (input data, Slicer mrb file. 71 MB). 
[http://slicer.kitware.com/midas3/download/?items=95058 '''RegLib_C29_full.mrb'''] (input data+results, Slicer mrb file. 124 MB). 
|-
| align="center" | 32
|
{|
| [[Image:RegLib_C32_Thumb4.png|200px|left|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C32]]
| Alignment of structural reference T1 to a DTI scan
|}
| brain
| affine + nonrigid
| DTI
|[http://slicer.kitware.com/midas3/download/?items=103594 '''RegLib_C32.mrb'''] (input data, Slicer mrb file. 31 MB). 
[http://slicer.kitware.com/midas3/download/?items=103593 '''RegLib_C32_full.mrb'''] (input data+results, Slicer mrb file. 36 MB). 
|-
| align="center" | 37 [[Image:UnderConstruction.png|40px]]
|
{|
| [[Image:RegLib_C37_Thumb1.png|200px|lleft|RegLib C37: tumor resection|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C37]]
| brain tumor resection
|}
| brain
| non-rigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=xx '''RegLib_C37.mrb'''] (input data only, Slicer mrb file. 12 MB) 
[http://slicer.kitware.com/midas3/download/?items=xx '''RegLib_C7_full.mrb'''] (input data + results, Slicer mrb file. 36 MB). 
|-
| align="center" | 38
|
{|
| [[Image:RegLib_C38_Thumb5.png|200px|left|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C38]]
| Alignment of multi-sequence MRI
|}
|traumatic brain injury (TBI)
|rigid
|MRI
|[http://slicer.kitware.com/midas3/download/?items=103791 '''RegLib_C38.mrb'''] (input data, Slicer mrb file. 42 MB). 
|-
| align="center" | 39
|
{|
| [[Image:RegLib_C39_Thumb1.png|200px|lleft|RegLib C39: in vitro CT of human vertebra|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C39]]
| in vitro CT of human vertebra before and after structural damage
|}
| vertebra
| rigid
| CT
|[http://slicer.kitware.com/midas3/download/?items=119824 '''RegLib_C39.mrb'''] (input data only, Slicer mrb file. 25 MB) 
[http://slicer.kitware.com/midas3/download/?items=119823 '''RegLib_C39_full.mrb'''] (input data + results, Slicer mrb file. 45 MB). 
|-
| align="center" | 40
|
{|
| [[Image:RegLib_C40_Thumb1.png|200px|lleft|RegLib C40: micro CT of material sample|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C40]]
| register micro-CT of wood sample to quantify/model structural changes
|}
| wood sample
| non-rigid
| micro-CT
|[http://slicer.kitware.com/midas3/download/?items=119692 '''RegLib_C40.mrb'''] (input data only, Slicer mrb file. 32 MB) 
[http://slicer.kitware.com/midas3/download/?items=119691 '''RegLib_C40_full.mrb'''] (input data + results, Slicer mrb file. 100 MB). 
|-
| align="center" | 41
|
{|
| [[Image:RegLib_C41_Thumb1.png|200px|lleft|RegLib C41: mouse brain MRI|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C41]]
| Align two distinct mouse brain MRIs
|}
| mouse brain
| non-rigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=119689 '''RegLib_C41.mrb'''] (input data only, Slicer mrb file. 32 MB) 
[http://slicer.kitware.com/midas3/download/?items=119688 '''RegLib_C41_full.mrb'''] (input data + results, Slicer mrb file. 100 MB). 
|-
| align="center" | 42
|
{|
| [[Image:RegLib_C42_Thumb1.png|200px|lleft|RegLib C42: pediatric MRI|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C42]]
| autism
|}
| brain
| non-rigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=119557 '''RegLib_C42.mrb'''] (input data only, Slicer mrb file. 12 MB) 
[http://slicer.kitware.com/midas3/download/?items=119556 '''RegLib_C42_full.mrb'''] (input data + results, Slicer mrb file. 36 MB). 
|-
| align="center" | 44
|
{|
| [[Image:RegLib_C44_Thumb1.png|200px|lleft|RegLib C44: pelvic MRI|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C44]]
| pelvis
|}
| abdominal
| non-rigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=119555 '''RegLib_C44.mrb'''] (input data only, Slicer mrb file. 74 MB) 
[http://slicer.kitware.com/midas3/download/?items=119554 '''RegLib_C44_full.mrb'''] (input data + results, Slicer mrb file. 82 MB). 
|-
| align="center" | 46
|
{|
| [[Image:RegLib_C46_DisplacementField.gif|200px|lleft|RegLib C46: 2D cine MRI of breathing cycle|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C46]]
| 2D cine MRI of breathing cycle
|}
| abdominal
| non-rigid 2D , batch processing
| MRI
|[http://slicer.kitware.com/midas3/download/?items=119459 '''RegLib_C46.mrb'''] (input data (ref + 1 slice only), Slicer mrb file. 0.6 MB) 
[http://slicer.kitware.com/midas3/download/?items=119460 '''RegLib_C46_Data.zip'''] (input data + results, zip file with original DICOM + registration script. 65 MB). 
|-
| align="center" | 48
|
{|
| [[Image:RegLib_C48_Thumb3.png|200px|lleft|RegLib C48: Fiducial Registration of Abdominal MR-CT|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C48]]
| Preop MRI to intraop interventional CT
|}
| abdominal
| Fiducial-based rigid
| CT
|[http://slicer.kitware.com/midas3/download/?items=118088 '''RegLib_C48.mrb'''] (input data only (incl. example fiducials) , Slicer mrb file. 10 MB) 
[http://slicer.kitware.com/midas3/download/?items=118087 '''RegLib_C48_full.mrb'''] (input data + results, Slicer mrb file. 12 MB). 
|-
| align="center" | 49
|
{|
| [[Image:RegLib_C49_Thumb1.png|200px|lleft|RegLib C49: Pediatric Brain MR-DTI|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C49]]
| Pediatric Brain MR-DTI
|}
| brain
| affine + BSpline
| MRI
|[http://slicer.kitware.com/midas3/download/?items=118347 '''RegLib_C49.mrb'''] (input data only (incl. example fiducials) , Slicer mrb file. 50 MB) 
[http://slicer.kitware.com/midas3/download/?items=118346 '''RegLib_C49_full.mrb'''] (input data + results, Slicer mrb file. 82 MB). 
|-
| align="center" | 50
|
{|
| [[Image:RegLib_C50_Thumb1.png|200px|lleft|RegLib C50: Mouse CT|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C50]]
| mouse brain micro-CT
|}
| mouse brain
| affine + BSpline
| micro-CT
|[http://slicer.kitware.com/midas3/download/?items=127956 '''RegLib_C50.mrb'''] (input data only (incl. example fiducials) , Slicer mrb file. 50 MB) 
[http://slicer.kitware.com/midas3/download/?items=127955 '''RegLib_C50_full.mrb'''] (input data + results, Slicer mrb file. 82 MB). 
|}

@@ Line 45: / Line 45: @@
 | MRI
 |[http://slicer.kitware.com/midas3/download/?items=115374 '''RegLib_C02.mrb'''] <br><small>(input data only , Slicer mrb file. 19 MB) </small><br>
-[http://slicer.kitware.com/midas3/download/?items=115373 '''RegLib_C02_full.mrb''']<br><small>(input data + results, Slicer mrb file. 19 MB). </small>
+[http://slicer.kitware.com/midas3/download/item/244967/RegLib_C02_full.mrb '''RegLib_C02_full.mrb''']<br><small>(input data + results, Slicer mrb file. 19 MB). </small>
 |-
 | align="center" | 3
@@ Line 69: / Line 69: @@
 | MRI
 |[http://slicer.kitware.com/midas3/download/?items=116480 '''RegLib_C04.mrb'''] <br><small>(input data only , Slicer mrb file. 19 MB) </small><br>
-[http://slicer.kitware.com/midas3/download/?items=116479 '''RegLib_C04_full.mrb''']<br><small>(input data + results, Slicer mrb file. 19 MB). </small>
+[http://slicer.kitware.com/midas3/download/item/244968/RegLib_C04_full.mrb '''RegLib_C04_full.mrb''']<br><small>(input data + results, Slicer mrb file. 19 MB). </small>
 |-
 | align="center" | 6

Documentation/4.5/Registration/RegistrationLibrary - Revision history

JChris.FillionR at 20:41, 30 June 2016

UpdateBot: Nightly -> 4.5