https://www.slicer.org/w/index.php?action=history&feed=atom&title=Documentation%2F4.5%2FModules%2FTractographyDisplayDocumentation/4.5/Modules/TractographyDisplay - Revision history2026-04-10T00:14:47ZRevision history for this page on the wikiMediaWiki 1.33.0https://www.slicer.org/w/index.php?title=Documentation/4.5/Modules/TractographyDisplay&diff=43506&oldid=prevUpdateBot: Nightly -> 4.52015-11-12T21:54:24Z<p>Nightly -> 4.5</p>
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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
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This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br><br />
Author: Isaiah Norton, Goldby Lab<br><br />
Author: Demian Wassermann, SPL<br><br />
Contributor1: Steve Pieper, Isomics Inc.<br><br />
Contributor2: Alex YarmarKovich, Isomics Inc.<br><br />
Contact: Demian Wassermann, <email>demian@bwh.harvard.edu</email><br><br />
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Allows the user to manipulate several different characteristics of the traced white matter tracts. Examples are: change of color; display of the fractional anisotropy along the tract; display of the tracts as tubes or lines; interactive selection of the tracts; and cropping.<br />
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Most frequently used for these scenarios:<br />
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* Use Case 1: Change the scalar quantity displayed along the tract, like Fractional Anisotropy or Color By Orientation<br />
* Use Case 2: Display the tracts as lines or tubes<br />
* Use Case 3: Interactive selection or cropping of a certain bundle.<br />
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Links to tutorials that use this module<br />
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** Line: Display the tracts as lines<br />
** Tube: Display the tracts as tubes<br />
*** Slice Intersection: Show the tracts in the 2D view<br />
** Glyph: Display glyphs representing the diffusion tensors along the tracts<br />
** Percentage of Fibers Shown: Select how many of the total tracts in the bundle are shown. Useful for performance.<br />
* Fiber Bundle Selection: Perform interactive selection and cropping of the tracts<br />
** ROI for Fiber Selection: Select a ROI to use as an interactor with the tracts<br />
** Disable/Positive/Negative ROI: Set the selection mode to '''Select everything'''; '''Select the tracts traversing the ROI'''; '''Select the tracts not traversing the ROI'''<br />
** Create Bundle From ROI: Create a new fiber bundle which contains only the selected ones<br />
** Update Bundle From ROI: Update the current fiber bundle leaving only the selected ones<br />
* Advance Display: For the lines, tubes and glyphs<br />
** Visibility: Toggle the visibility of the bundle<br />
** Opacity: Change the transparency level of the bundle<br />
** Color By: Change the way the bundle is colored; either by a tensor-derived property or by a group id<br />
** Solid Color: Color the bundle of a single solid color<br />
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Publications related to this module go here. Links to pdfs would be useful.<br />
For extensions: link to the source code repository and additional documentation<br />
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