https://www.slicer.org/w/index.php?action=history&feed=atom&title=Documentation%2F4.5%2FExtensions%2FDTIAtlasBuilderDocumentation/4.5/Extensions/DTIAtlasBuilder - Revision history2026-04-04T23:25:28ZRevision history for this page on the wikiMediaWiki 1.33.0https://www.slicer.org/w/index.php?title=Documentation/4.5/Extensions/DTIAtlasBuilder&diff=43766&oldid=prevUpdateBot: Nightly -> 4.52015-11-12T22:09:41Z<p>Nightly -> 4.5</p>
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This extension currently does not work in Slicer4 nightly build on Windows and Mac. This should be corrected soon.<br />
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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
Author: Adrien Kaiser<br><br />
Contact: Adrien Kaiser, <email>akaiser@unc.edu</email><br><br />
Website: http://www.nitrc.org/projects/dtiatlasbuilder/<br><br />
License: [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br />
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===Quick Tour of Features and Use===<br />
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This tool creates an Atlas image as an average of several DTI images that will be registered. The registration will be done in two steps :<br />
- Affine Registration with BRAINSFit<br />
- Non Linear Registration with AtlasWerks<br />
A final step will apply the transformations to the original DTI images so that the final average can be computed.<br />
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The main function writes a python script that will be executed to compute the Atlas.<br />
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By running DTIAtlasBuilder, you will need to fill in informations in a Graphical User Interface, and then compute the Atlas. You can also run the tool in command line without using the GUI.<br />
Using the GUI, you will be able to save or load a dataset file or a parameter file.<br />
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* <span style="color:blue">'''''Parameters'''''</span>:<br />
** <span style="color:green">'''Parameter File'''</span> [<span style="color:orange">--parameter_file</span>] [<span style="color:pink">-p</span>]: Parameter file created with this program (.txt)<br />
** <span style="color:green">'''Dataset File'''</span> [<span style="color:orange">--dataset_file</span>] [<span style="color:pink">-d</span>]: CSV file containing the dataset (.csv)<br />
** <span style="color:green">'''Configuration file'''</span> [<span style="color:orange">--configuration_file</span>] [<span style="color:pink">-c</span>]: Software configuration file (.txt)<br />
** <span style="color:green">'''Overwrite'''</span> [<span style="color:orange">--overwrite</span>]: If you want to overwrite on previous compute (default: 0)<br />
** <span style="color:green">'''No GUI'''</span> [<span style="color:orange">--nogui</span>] : If you do not need the GUI (default: 0)<br />
|[[Image:DTIAtlasBuilder_Interface.png|thumb|280px|User Interface]]<br />
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Image:DTIAtlasBuilder_Interface.png|Files tab<br />
Image:DTIAtlasBuilder_Affine.png|Affine Atlas tab<br />
Image:DTIAtlasBuilder_Diffeo.png|Diffeomorphic Atlas tab<br />
Image:DTIAtlasBuilder_FinalRes.png|Final Resampling tab<br />
Image:DTIAtlasBuilder_SoftConfig.png|Software Configuration tab<br />
Image:DTIAtlasBuilder_GridProc.png|Grid Processing tab<br />
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{{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br />
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{{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br />
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More information as well as the source code can found on the project webpage: http://www.nitrc.org/projects/dtiatlasbuilder/<br />
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