Documentation/4.4/gif tutorial v3 4 - Revision history

Irosen at 20:29, 20 July 2015

2015-07-20T20:29:29Z

Irosen at 19:39, 20 July 2015

2015-07-20T19:39:44Z

Irosen at 19:34, 20 July 2015

2015-07-20T19:34:30Z

Irosen: /* Tractography exploration of peritumoral white matter fibers */

2015-07-20T19:33:09Z

Tractography exploration of peritumoral white matter fibers

Irosen: Created page with '===Tractography exploration of peritumoral white matter fibers=== {| class="wikitable3" cellpadding="5px" |-align="center" |style="width:50%"|600px |style=…'

2015-07-20T19:16:57Z

Created page with '===Tractography exploration of peritumoral white matter fibers=== {| class="wikitable3" cellpadding="5px" |-align="center" |style="width:50%"|frame|600px |style=…'

New page

===Tractography exploration of peritumoral white matter fibers===

{| class="wikitable3" cellpadding="5px"
|-align="center"
|style="width:50%"|[[image:x.gif|frame|600px]]
|style="width:50%"|[[image:y.gif|frame|600px]]
|-valign="top"
|1. a) Make sure the cystic part is selected and visible in the 3 slice views. b) Click on the Dilate Effect tool then click on the cystic part of the tumor on the red slice view.
|2. Click on Apply 3 times to generate the peritumoral volume.
|-align="center"
|style="width:50%"|[[image:z.gif|frame|600px]]
|style="width:50%"|[[image:c.gif|frame|600px]]
|-valign="top"
|3. Select the module "Tractography Label Map Seeding" by clicking "Editor" at the top, then "Diffusion", then "Diffusion Tensor Imaging".
|4. Make sure that "DTI Volume" is selected for Input DTI Volume and "BaselineVolumeregion_1-label" is selected for Input Label Map.
|-align="center"
|style="width:50%"|[[image:a.gif|frame|600px]]
|style="width:50%"|[[image:b.gif|frame|600px]]
|-valign="top"
|5. a) For Output Fiber Bundle select "Create and rename newFiberBundle". b)When the pop-up appears rename the fiber bundle to to "newFiberBundle".
|6. a) Under the Seed Placement Options: Check the Use Index Space. b) Under Tractography Seeding parameter set the stopping value to "0.15" and make sure for Stopping Criteria that "Fractional Anisotropy" is selected.
|-align="center"
|style="width:50%"|[[image:d.gif|frame|600px]]
|-valign="top"
|7. Under Label Definition set the "Seeding Label" to 293, and Click on Apply.
|}

← Older revision		Revision as of 20:29, 20 July 2015
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	\|[[image:Neurosurgical Planning tutorial.png\|700px\|center]]		\|[[image:Neurosurgical Planning tutorial.png\|700px\|center]]

		+	{\| class="wikitable" style="border-spacing: 2px; border: 1px solid darkgray;"
		+	! scope="col" \| Table of Contents
		+	\|-
		+	\|[[Documentation/4.4/gif tutorial v3 1\|1. Loading DTI and Baseline Data]]
		+	\|-
		+	\|[[Documentation/4.4/gif tutorial v3 2\|2. Segmentation]]
		+	\|-
		+	\|[[Documentation/4.4/gif tutorial v3 3\|3. Tractography exploration of peritumoral white matter fibers]]
		+	\|}

	===Tractography exploration of the ipsilateral and contralateral side===		===Tractography exploration of the ipsilateral and contralateral side===

← Older revision		Revision as of 19:39, 20 July 2015
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		+	\|[[image:Neurosurgical Planning tutorial.png\|700px\|center]]
		+
		+
	===Tractography exploration of the ipsilateral and contralateral side===		===Tractography exploration of the ipsilateral and contralateral side===

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−	<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 3\|Previous]]'''</div>	+	<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 3\|Previous Step]]'''</div>

← Older revision		Revision as of 19:34, 20 July 2015
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	\|4. Under the "Tractography Seeding Parameters" set the Minimum Path Length to 10.0 mm and the FA Stopping Value at 0.15.		\|4. Under the "Tractography Seeding Parameters" set the Minimum Path Length to 10.0 mm and the FA Stopping Value at 0.15.
	\|}		\|}
		+
		+
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		+	<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 3\|Previous]]'''</div>

@@ Line 1: / Line 1: @@
-===Tractography exploration of peritumoral white matter fibers===
+===Tractography exploration of the ipsilateral and contralateral side===
 {| class="wikitable3" cellpadding="5px"
 |-align="center"
-|style="width:50%"|[[image:x.gif|frame|600px]]
+|style="width:50%"|[[image:l.gif|frame|600px]]
-|style="width:50%"|[[image:y.gif|frame|600px]]
+|style="width:50%"|[[image:m.gif|frame|600px]]
 |-valign="top"
-|1.  a) Make sure the cystic part is selected and visible in the 3 slice views.   b) Click on the Dilate Effect tool then click on the cystic part of the tumor on the red slice view.
+|1.  a) Click on the Modules menu and select the module "Tractography Interactive Seeding" after selecting "Diffusion" then selecting "Diffusion Tensor Imaging". b) For the Red Slice view position the mouse over the pin icon and change the volume to DTIVolume.
-|2. Click on Apply 3 times to generate the peritumoral volume.
+|2. Select the Fiducial icon located at the top, and position the F-1 point next to the cystic part of the tumor by clicking near it in the 3D viewer.
 |-align="center"
-|style="width:50%"|[[image:z.gif|frame|600px]]
+|style="width:50%"|[[image:n.gif|frame|600px]]
-|style="width:50%"|[[image:c.gif|frame|600px]]
+|style="width:50%"|[[image:o.gif|frame|600px]]
 |-valign="top"
-|3. Select the module "Tractography Label Map Seeding" by clicking "Editor" at the top, then "Diffusion", then "Diffusion Tensor Imaging".
+|3. Under IO set Input DTI Volume to "DTIVolume", set Fiducial List or Model to "F", set Output Fiber Bundle to "Create new Fiber Bundle", then click ok for the pop-up..
-|4. Make sure that "DTI Volume" is selected for Input DTI Volume and "BaselineVolumeregion_1-label" is selected for Input Label Map.
+|4. Under the "Tractography Seeding Parameters" set the Minimum Path Length to 10.0 mm and the FA Stopping Value at 0.15.
 |}