Documentation/4.4/gif tutorial v3 3 - Revision history

Irosen at 20:28, 20 July 2015

2015-07-20T20:28:41Z

Irosen at 19:39, 20 July 2015

2015-07-20T19:39:26Z

Irosen at 19:28, 20 July 2015

2015-07-20T19:28:48Z

Irosen at 19:28, 20 July 2015

2015-07-20T19:28:27Z

Irosen: /* Loading DTI and Baseline Data */

2015-07-20T19:13:05Z

Loading DTI and Baseline Data

Irosen: /* Loading DTI and Baseline Data */

2015-07-20T19:09:28Z

Loading DTI and Baseline Data

Irosen: /* Loading DTI and Baseline Data */

2015-07-20T19:07:52Z

Loading DTI and Baseline Data

Irosen: /* Loading DTI and Baseline Data */

2015-07-20T19:07:00Z

Loading DTI and Baseline Data

Irosen: /* Tractography exploration of peritumoral white matter fibers */

2015-07-20T19:05:51Z

Tractography exploration of peritumoral white matter fibers

Irosen: Created page with '===Tractography exploration of peritumoral white matter fibers===
{|sty…'

2015-07-20T18:49:04Z

Created page with '===Tractography exploration of peritumoral white matter fibers=== <div style="width: 62%; height:525px; overflow:auto; border: 2px solid #088; margin: 1em auto 1em auto;"> {|sty…'

New page

===Tractography exploration of peritumoral white matter fibers===

<div style="width: 62%; height:525px; overflow:auto; border: 2px solid #088; margin: 1em auto 1em auto;">
{|style="width: 62%; height: 200px;" border="1"
|[[image:x.gif|600px|frame|1. a) Make sure the cystic part is selected and visible in the 3 slice views. b) Click on the Dilate Effect tool then click on the cystic part of the tumor on the red slice view.]]
|- style="height: 100px;"
|[[image:y.gif|600px|frame|2. Click on Apply 3 times to generate the peritumoral volume]]
|- style="height: 100px;"
|[[image:z.gif|600px|frame|3. Select the module "Tractography Label Map Seeding" by clicking "Editor" at the top, then "Diffusion", then "Diffusion Tensor Imaging".]]
|- style="height: 100px;"
|[[image:c.gif|600px|frame|4. Make sure that "DTI Volume" is selected for Input DTI Volume and "BaselineVolumeregion_1-label" is selected for Input Label Map]]
|- style="height: 100px;"
{|style="width: 62%; height: 200px;" border="1"
|[[image:a.gif|600px|frame|5. a) For Output Fiber Bundle select "Create and
rename newFiberBundle". b)When the pop-up appears rename the fiber bundle to to "newFiberBundle". ]]
|- style="height: 100px;"
|[[image:b.gif|600px|frame|6. a) Under the Seed Placement Options: Check the Use Index Space. b) Under Tractography Seeding parameter set the stopping value to "0.15" and make sure for Stopping Criteria that "Fractional Anisotropy" is selected. ]]
|- style="height: 100px;"
|[[image:d.gif|600px|frame|7. Under Label Definition set the "Seeding Label" to 293, and Click on Apply]]
|- style="height: 100px;"
|}
</div>

← Older revision		Revision as of 20:28, 20 July 2015
Line 1:		Line 1:
	\|[[image:Neurosurgical Planning tutorial.png\|700px\|center]]		\|[[image:Neurosurgical Planning tutorial.png\|700px\|center]]

		+	{\| class="wikitable" style="border-spacing: 2px; border: 1px solid darkgray;"
		+	! scope="col" \| Table of Contents
		+	\|-
		+	\|[[Documentation/4.4/gif tutorial v3 1\|1. Loading DTI and Baseline Data]]
		+	\|-
		+	\|[[Documentation/4.4/gif tutorial v3 2\|2. Segmentation]]
		+	\|-
		+	\|[[Documentation/4.4/gif tutorial v3 4\|4. Tractography exploration of the ipsilateral and contralateral side]]
		+	\|}

	===Tractography exploration of peritumoral white matter fibers===		===Tractography exploration of peritumoral white matter fibers===

@@ Line 1: / Line 1: @@
 ===Tractography exploration of peritumoral white matter fibers===
@@ Line 28: / Line 31: @@
-<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 4|Next]]'''</div>
+<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 4|Next Step]]'''</div>
-<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 2|Previous]]'''</div>
+<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 2|Previous Step]]'''</div>

← Older revision		Revision as of 19:28, 20 July 2015
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−	div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 4\|Next]]'''</div>	+	<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 4\|Next]]'''</div>
	<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 2\|Previous]]'''</div>		<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 2\|Previous]]'''</div>

← Older revision		Revision as of 19:28, 20 July 2015
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	\|7. Under Label Definition set the "Seeding Label" to 293, and Click on Apply.		\|7. Under Label Definition set the "Seeding Label" to 293, and Click on Apply.
	\|}		\|}
		+
		+
		+
		+	div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 4\|Next]]'''</div>
		+	<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 2\|Previous]]'''</div>

← Older revision		Revision as of 19:13, 20 July 2015
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−	===~~Loading DTI and Baseline Data~~===	+	===Tractography exploration of peritumoral white matter fibers===

	{\| class="wikitable3" cellpadding="5px"		{\| class="wikitable3" cellpadding="5px"

@@ Line 6: / Line 6: @@
 |style="width:50%"|[[image:y.gif|frame|600px]]
 |-valign="top"
-|1. a) Make sure the cystic part is selected and visible in the 3 slice views. b) Click on the Dilate Effect tool then click on the cystic part of the tumor on the red slice view.
+|1.  a) Make sure the cystic part is selected and visible in the 3 slice views.   b) Click on the Dilate Effect tool then click on the cystic part of the tumor on the red slice view.
 |2. Click on Apply 3 times to generate the peritumoral volume.
 |-align="center"
@@ Line 18: / Line 18: @@
 |style="width:50%"|[[image:b.gif|frame|600px]]
 |-valign="top"
-|5. a) For Output Fiber Bundle select "Create and rename newFiberBundle". b)When the pop-up appears rename the fiber bundle to to "newFiberBundle".
+|5.  a) For Output Fiber Bundle select "Create and rename newFiberBundle".   b)When the pop-up appears rename the fiber bundle to to "newFiberBundle".
-|6.a) Under the Seed Placement Options: Check the Use Index Space. b) Under Tractography Seeding parameter set the stopping value to "0.15" and make sure for Stopping Criteria that "Fractional Anisotropy" is selected.
+|6.  a) Under the Seed Placement Options: Check the Use Index Space.   b) Under Tractography Seeding parameter set the stopping value to "0.15" and make sure for Stopping Criteria that "Fractional Anisotropy" is selected.
 |-align="center"
 |style="width:50%"|[[image:d.gif|frame|600px]]

@@ Line 1: / Line 1: @@
-===Tractography exploration of peritumoral white matter fibers===
+===Loading DTI and Baseline Data===
-<div style="width: 62%; height:525px; overflow:auto; border: 2px solid #088; margin: 1em auto 1em auto;">
+{| class="wikitable3" cellpadding="5px"
-{|style="width: 62%; height: 200px;" border="1"
+|-align="center"
-|[[image:x.gif|600px|frame|1. a) Make sure the cystic part is selected and visible in the 3 slice views. b) Click on the Dilate Effect tool then click on the cystic part of the tumor on the red slice view.]]
+|style="width:50%"|[[image:x.gif|frame|600px]]
-|- style="height: 100px;"
+|style="width:50%"|[[image:y.gif|frame|600px]]
-|[[image:y.gif|600px|frame|2. Click on Apply 3 times to generate the peritumoral volume]]
+|-valign="top"
-|- style="height: 100px;"
+|1. a) Make sure the cystic part is selected and visible in the 3 slice views. b) Click on the Dilate Effect tool then click on the cystic part of the tumor on the red slice view.
-|[[image:z.gif|600px|frame|3. Select the module "Tractography Label Map Seeding" by clicking "Editor" at the top, then "Diffusion", then "Diffusion Tensor Imaging".]]
+|2. Click on Apply 3 times to generate the peritumoral volume.
-|- style="height: 100px;"
+|-align="center"
-|[[image:c.gif|600px|frame|4. Make sure that "DTI Volume" is selected for Input DTI Volume and "BaselineVolumeregion_1-label" is selected for Input Label Map]]
+|style="width:50%"|[[image:z.gif|frame|600px]]
-|- style="height: 100px;"
+|style="width:50%"|[[image:c.gif|frame|600px]]
-{|style="width: 62%; height: 200px;" border="1"
+|-valign="top"
-|[[image:a.gif|600px|frame|5. a) For Output Fiber Bundle select "Create and
+|3. Select the module "Tractography Label Map Seeding" by clicking "Editor" at the top, then "Diffusion", then "Diffusion Tensor Imaging".
-rename newFiberBundle". b)When the pop-up appears rename the fiber bundle to to "newFiberBundle". ]]
+|4. Make sure that "DTI Volume" is selected for Input DTI Volume and "BaselineVolumeregion_1-label" is selected for Input Label Map.
-|- style="height: 100px;"
+|-align="center"
-|[[image:b.gif|600px|frame|6. a) Under the Seed Placement Options: Check the Use Index Space. b) Under Tractography Seeding parameter set the stopping value to "0.15" and make sure for Stopping Criteria that "Fractional Anisotropy" is selected.  ]]
+|style="width:50%"|[[image:a.gif|frame|600px]]
-|- style="height: 100px;"
+|style="width:50%"|[[image:b.gif|frame|600px]]
-|[[image:d.gif|600px|frame|7. Under Label Definition set the "Seeding Label" to 293, and Click on Apply]]
+|-valign="top"
-|- style="height: 100px;"
+|5. a) For Output Fiber Bundle select "Create and
 |}

Documentation/4.4/gif tutorial v3 3 - Revision history

Irosen at 20:28, 20 July 2015

Irosen at 19:39, 20 July 2015

Irosen at 19:28, 20 July 2015

Irosen at 19:28, 20 July 2015

Irosen: /* Loading DTI and Baseline Data */

Irosen: /* Loading DTI and Baseline Data */

Irosen: /* Loading DTI and Baseline Data */

Irosen: /* Loading DTI and Baseline Data */

Irosen: /* Tractography exploration of peritumoral white matter fibers */

Irosen: Created page with '===Tractography exploration of peritumoral white matter fibers=== {|sty…'

Irosen: Created page with '===Tractography exploration of peritumoral white matter fibers===
{|sty…'