Documentation/4.4/gif tutorial v3 2 - Revision history

Irosen at 20:27, 20 July 2015

2015-07-20T20:27:35Z

Irosen at 19:35, 20 July 2015

2015-07-20T19:35:35Z

Irosen at 19:03, 20 July 2015

2015-07-20T19:03:04Z

Irosen at 19:02, 20 July 2015

2015-07-20T19:02:24Z

Irosen: Created page with '===Segmentation=== {| class="wikitable3" cellpadding="5px" |-align="center" |style="width:50%"|600px |style="width:50%"|600px |-valig…'

2015-07-20T18:26:28Z

Created page with '===Segmentation=== {| class="wikitable3" cellpadding="5px" |-align="center" |style="width:50%"|frame|600px |style="width:50%"|frame|600px |-valig…'

New page

===Segmentation===

{| class="wikitable3" cellpadding="5px"
|-align="center"
|style="width:50%"|[[image:5.gif|frame|600px]]
|style="width:50%"|[[image:6.gif|frame|600px]]
|-valign="top"
|1. a) Click on the Modules menu and select the module Editor. b)The ‘SlicerApp-real’ window appears. Select the label map GenericAnatomyColors and click Apply.
|2. a) Select the PaintEffect b) Scroll down the Editor module and choose color #293 for the region 1 label
|-align="center"
|style="width:50%"|[[image:7.gif|frame|600px]]
|style="width:50%"|[[image:8.gif|frame|600px]]
|-valign="top"
|3. a) In a single motion, draw a short line in the cystic part of the tumor b) Select color #294 for the mass label and, again in a single motion, draw a short line in the solid part of the tumor c) Select color #295 for the region 3 and draw a circle around the tumor
|4. Select the GrowCutEffect tool and then click Apply
|-align="center"
|style="width:50%"|[[image:9.gif|frame|600px]]
|style="width:50%"|[[image:10.gif|frame|600px]]
|-valign="top"
|5. Scroll up the Editor menu and select the tab Per-Structure Volumes. Then click Split Merge Volume.
|6. a) Select the volume BaselineVolumeregion_3-label so that it is highlighted and that the yellow region is visible in the viewer b) Select the ThresholdEffect tool
|-align="center"
|style="width:50%"|[[image:11.gif|frame|600px]]
|style="width:50%"|[[image:12.gif|frame|600px]]
|-valign="top"
|7. Scroll down the Editor module and set the lower Threshold Range to 1700 and click Apply.
|8. a) Select the SaveIslandEffect in the Editor module b) With the SaveIslandEffect tool equipped, click in the occipital horn of the ventricle.
|-align="center"
|style="width:50%"|[[image:13.gif|frame|600px]]
|style="width:50%"|[[image:14.gif|frame|600px]]
|-valign="top"
|9. a) Scroll back up and click on Merge and Build to merge the different label maps, and generate the 3D models of the tumor and ventricles using a Marching Cubes algorithm. b) Click on the Layout menu and select Conventional.
|10. Slicer displays the 3D surface reconstructions of the ventricles, and solid and cystic parts of the tumor.
|-align="center"
|style="width:50%"|[[image:15.gif|frame|600px]]
|-valign="top"
|11. Position the mouse over the pin icon, and select the eye icon to view the all the slices in the 3D viewer.
|}

← Older revision		Revision as of 20:27, 20 July 2015
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	\|[[image:Neurosurgical Planning tutorial.png\|700px\|center]]		\|[[image:Neurosurgical Planning tutorial.png\|700px\|center]]
		+
		+	{\| class="wikitable" style="border-spacing: 2px; border: 1px solid darkgray;"
		+	! scope="col" \| Table of Contents
		+	\|-
		+	\|[[Documentation/4.4/gif tutorial v3 1\|1. Loading DTI and Baseline Data]]
		+	\|-
		+	\|[[Documentation/4.4/gif tutorial v3 3\|3. Tractography exploration of peritumoral white matter fibers]]
		+	\|-
		+	\|[[Documentation/4.4/gif tutorial v3 4\|4. Tractography exploration of the ipsilateral and contralateral side]]
		+	\|}

	===Segmentation===		===Segmentation===

← Older revision		Revision as of 19:35, 20 July 2015
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−	<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 3\|Next]]'''</div>	+	<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 3\|Next Step]]'''</div>
−	<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 1\|Previous]]'''</div>	+	<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 1\|Previous Step]]'''</div>

← Older revision		Revision as of 19:03, 20 July 2015
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		+	\|[[image:Neurosurgical Planning tutorial.png\|700px\|center]]
		+
	===Segmentation===		===Segmentation===

← Older revision		Revision as of 19:02, 20 July 2015
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	\|11. Position the mouse over the pin icon, and select the eye icon to view the all the slices in the 3D viewer.		\|11. Position the mouse over the pin icon, and select the eye icon to view the all the slices in the 3D viewer.
	\|}		\|}
		+
		+
		+
		+	<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 3\|Next]]'''</div>
		+	<div style="text-align: center;">'''[[Documentation/4.4/gif tutorial v3 1\|Previous]]'''</div>