Pinter at 21:13, 6 February 2015

2015-02-06T21:13:00Z

UpdateBot: Nightly -> 4.4

2014-12-25T06:46:59Z

Nightly -> 4.4

New page

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[[File:LogoCco.png|Cancer Care Ontario]]
[[File:Logo-SparKit.png|SparKit]]
[[File:LogoOCAIRO.jpg|SparKit]]


{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
Authors: Csaba Pinter (PerkLab, Queen's University), Andras Lasso (PerkLab, Queen's University), Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto) 
Contributors: Greg Sharp (Massachusetts General Hospital), Steve Pieper (Isomics) 
Contacts:
* Csaba Pinter, <email>csaba.pinter@queensu.ca</email>
* Andras Lasso, <email>lasso@cs.queensu.ca</email>
* Mailing list, <email>slicerrt@alerts.assembla.com</email> (need to register to [http://www.assembla.com Assembla] using the email address from which the email is sent)
* [[Documentation/SlicerRT/HowToReportAnError|How to report an error]]
Website: [http://slicerrt.github.io slicerrt.org] 
License: [http://www.slicer.org/pages/LicenseText Slicer license] 
'''Download/install:''' install 3D Slicer, start 3D Slicer, open the Extension Manager, install the SlicerRT extension (see more details [http://slicerrt.github.io/Download.html on the download page])



{{documentation/{{documentation/version}}/extension-section|Extension Description}}
{|
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[[Image:SlicerRT_Logo_2.0_128x128.png]]
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* SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform. SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.

* The SlicerRT extension incorporates [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] modules and algorithms.

* Additional information for users can be found on the [[Documentation/SlicerRT/UsersGuide|User's guide]] page 
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|}

{| class="wikitable"
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{{documentation/{{documentation/version}}/extension-section|Modules}}

*[[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
*[[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]
*[[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
*[[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
*[[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
*[[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]
*[[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
*[[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]
*[[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]
*[https://subversion.assembla.com/svn/slicerrt/trunk/SlicerRt/src/BatchProcessing/ Batch processing scripts] (currently only one is available for command-line conversion of RTSS to volume nodes)

* Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)
**[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]] (Greg Sharp)
**[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]] (Greg Sharp)
**[[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]


* Former SlicerRT modules integrated to Slicer core
**[[Documentation/{{documentation/version}}/Modules/SubjectHierarchy|Subject hierarchy]]
**[[Documentation/{{documentation/version}}/Modules/DeformationFieldVisualizer|Transform visualizer]]


{{documentation/{{documentation/version}}/extension-section|Use Cases}}
* Comparison of dose maps and dose volume histograms from various treatment planning systems
* Evaluation of the effect of image-based non-rigid patient motion compensation
* Dose accumulation with motion compensation
* Evaluation of gel dosimetry
* Testing of treatment planning algorithms

| [[File:SlicerRt_Montage.jpg|1024px|SlicerRT highlights]]
|}


{{documentation/{{documentation/version}}/extension-section|Tutorials}}
* '''Summer NA-MIC week 2013 tutorial''' (recommended)
** Tutorial presentation: [http://wiki.na-mic.org/Wiki/images/b/b0/SlicerRT_TutorialContestSummer2013.pdf download] from Slicer wiki
** Sample data: [http://slicer.kitware.com/midas3/download/folder/1345/SlicerRtTutorial_Namic2013June.zip download] from MIDAS
* ECR 2013 - Medical University Vienna workshop
** Workshop material: [http://www.na-mic.org/Wiki/index.php/File:Pinter_MedUni2013_Workshop.pdf download] from NA-MIC.org
* RSNA 2012 tutorial
** Tutorial description: [http://www.donotlink.com/bEo SlicerRT wiki: Slicer tutorials at RSNA 2012]

** Sample data: [http://slicer.kitware.com/midas3/folder/859 download] SlicerRT ART dose verification data from Midas server
* Summer NA-MIC week 2012 tutorial
** Tutorial presentation: [http://www.donotlink.com/bEp download] from the SlicerRT website

** Sample data: [http://www.donotlink.com/bEq download] from the SlicerRT website



{{documentation/{{documentation/version}}/extension-section|Similar Extensions}}
* [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]]: SlicerRT and Plastimatch are complementary software libraries. Plastimatch focuses on delivering new computational methods radiotherapy, while SlicerRT aims for providing an easy-to-use interface for a wide range of stable, well-tested radiotherapy related features. SlicerRT uses Plastimatch internally for certain operations.
* [[Documentation/{{documentation/version}}/Modules/GelDosimetry|Gel Dosimetry]]: Slicelet facilitating a streamlined workflow to perform gel dosimetry analysis for commissioning linacs and evaluating new dose calculation procedures


{{documentation/{{documentation/version}}/extension-section|References}}
==How to cite==
Please cite the following paper when referring to SlicerRt in your publication: 
C. Pinter, A. Lasso, A. Wang, D. Jaffray and G. Fichtinger, [http://perk.cs.queensu.ca/sites/perk.cs.queensu.ca/files/Pinter2012_0.pdf "SlicerRT – Radiation therapy research toolkit for 3D Slicer"], Med. Phys., 39(10) pp. 6332-6338, 2012
<pre>
@ARTICLE{Pinter2012,
author = {Pinter, C. and Lasso, A. and Wang, A. and Jaffray, D. and Fichtinger, G.},
title = {SlicerRT – Radiation therapy research toolkit for 3D Slicer},
journal = {Med. Phys.},
year = {2012},
volume = {39},
number = {10},
pages = {6332-6338},
}
</pre>


{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
* [http://www.donotlink.com/bEr SlicerRT developers wiki page]



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 * SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform.<br>SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.

Documentation/4.4/Extensions/SlicerRT - Revision history

Pinter at 21:13, 6 February 2015

UpdateBot: Nightly -> 4.4