Documentation/4.4/Extensions/MarginCalculator - Revision history

Wangk at 18:06, 9 October 2015

2015-10-09T18:06:06Z

Wangk at 20:12, 21 August 2015

2015-08-21T20:12:06Z

Wangk at 20:11, 21 August 2015

2015-08-21T20:11:19Z

Wangk at 20:09, 21 August 2015

2015-08-21T20:09:30Z

Wangk at 20:09, 21 August 2015

2015-08-21T20:09:11Z

Wangk at 20:08, 21 August 2015

2015-08-21T20:08:08Z

Wangk at 20:03, 21 August 2015

2015-08-21T20:03:54Z

Wangk: Created page with '{{documentation/versioncheck}} {{documentation/{{documentation/version}}/module-header}}

@@ Line 41: / Line 41: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|Use Cases}}
@@ Line 46: / Line 50: @@
 {{documentation/{{documentation/version}}/extension-section|Tutorials}}
-* Sample scenes:
+* TBA
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}
-* [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]]: SlicerRT and Plastimatch are complementary software libraries. Plastimatch focuses on delivering new computational methods radiotherapy, while SlicerRT aims for providing an easy-to-use interface for a wide range of stable, well-tested radiotherapy related features. SlicerRT uses Plastimatch internally for certain operations.
+* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]]: SlicerRT and Margin Calculator are complementary software. Margin Calculator focuses specifically on the RT plan margin calculation, while SlicerRT aims for providing an easy-to-use interface for a wide range of stable, well-tested radiotherapy related features.
 * [[Documentation/{{documentation/version}}/Modules/GelDosimetry|Gel Dosimetry]]: Slicelet facilitating a streamlined workflow to perform gel dosimetry analysis for commissioning linacs and evaluating new dose calculation procedures

@@ Line 61: / Line 61: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|References}}
 <!-- ---------------------------- -->

@@ Line 56: / Line 56: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}
-N/A
+* [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]]: SlicerRT and Plastimatch are complementary software libraries. Plastimatch focuses on delivering new computational methods radiotherapy, while SlicerRT aims for providing an easy-to-use interface for a wide range of stable, well-tested radiotherapy related features. SlicerRT uses Plastimatch internally for certain operations.
 <!-- ---------------------------- -->

@@ Line 41: / Line 41: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|Use Cases}}
-[http://plastimatch.org/data_sources.html Sample data] to use with modules.
 <!-- ---------------------------- -->

@@ Line 54: / Line 54: @@
 {{documentation/{{documentation/version}}/extension-section|Tutorials}}
-<gallery widths="200px" perrow="4">
+* Sample scenes:
-Image:plastimatch_tutorial_ppt.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1023/3D_Slicer_Plastimatch_Registration_Tutorial.ppt Download tutorial]
+** [https://subversion.assembla.com/svn/slicerrt/trunk/MultidimData/data/SampleSceneCardiacCt.mrb Cardiac CT: sequence of volumes, real-time volume rendering]
-Image:plastimatch_tutorial_data.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1004/rider-lung-images.tar.gz Download tutorial data]
+** [https://subversion.assembla.com/svn/slicerrt/trunk/MultidimData/data/SampleSceneModelDeformation.mrb Deformation of a 3D model]
-Image:plastimatch_dicomrt_tutorial_ppt.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1568/3D_Slicer_Plastimatch_DICOM_RT_Tutorial_2010_12_28.pdf Download tutorial (PDF)]
+** [https://subversion.assembla.com/svn/slicerrt/trunk/MultidimData/data/SampleSceneUsGuidedNeedleInsertion.mrb Ultrasound-guided needle insertion: moving tracked ultrasound image and tools, synchronized replay of image ad transforms]
-Image:plastimatch_dicomrt_ss.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/934/chest-phantom-dicomrt-xio-4.33.02.tar.gz (Download tutorial data)]
+* Usage:
-Image:3D_Slicer_Plastimatch_Landmark_Registration_Tutorial.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1622/3D_Slicer_Plastimatch_Landmark_Registration_Tutorial.ppt Download tutorial]
+** Load the downloaded .mrb scene file into Slicer
-Image:fixed.png|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1619/synthetic_img.zip Download tutorial data]
+** Go to the Sequence browser module to browse the data set
 <!-- ---------------------------- -->

@@ Line 33: / Line 33: @@
 {{documentation/{{documentation/version}}/extension-section|Modules}}
-*[[Documentation/{{documentation/version}}/Modules/Sequences|Sequences]]
+*[[Documentation/{{documentation/version}}/Modules/DoseMorphology|Dose Morphology]]
-*[[Documentation/{{documentation/version}}/Modules/SequenceBrowser|Sequence browser]]
+*[[Documentation/{{documentation/version}}/Modules/DosePopulationHistogram|Dose Population Histogram]]
-*[[Documentation/{{documentation/version}}/Modules/MetafileImporter|Tracked ultrasound sequence importer]]
+*[[Documentation/{{documentation/version}}/Modules/MarginCalculator|MarginCalculator]]
 <!-- ---------------------------- -->

@@ Line 2: / Line 2: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-header}}
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
 {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
 {{documentation/{{documentation/version}}/module-introduction-row}}
-Acknowledgments:
+Contributors: Kevin Wang (Princess Margaret Cancer Centre), Winnie Li (Princess Margaret Cancer Centre)<br>
-This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by ... <br>
+Contact: Kevin Wang, <email>kevin.wang@rmp.uhn.ca</email><br>
-Author:Greg Sharp<br>
+Website: http://www.assembla.com/spaces/margincalculator<br>
-Contributors: Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}})<br>
+License: [http://www.slicer.org/pages/LicenseText Slicer license]
 {{documentation/{{documentation/version}}/module-introduction-row}}
 {{documentation/{{documentation/version}}/module-introduction-logo-gallery
-|{{collaborator|logo|namic}}|{{collaborator|longname|namic}}
+|{{collaborator|logo|sparkit}}|SparKit
 }}
 {{documentation/{{documentation/version}}/module-introduction-end}}
@@ Line 24: / Line 23: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|Extension Description}}
-Plastimatch is an open source software for image computation. Our main focus is high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET). Software features include:
+Multidimensional data is an extension of 3D Slicer to allow creating and visualization of higher-dimension data nodes, such as 4D volumes, models changing in time, markups changing in time, sequences of transforms, scene camera trajectory, or even sequence of sequences. Software features include:
-*B-spline method for deformable image registration (GPU and multicore accelerated)
+* Synthetic dose volume generation for testing.
-*Demons method for deformable image registration (GPU accelerated)
+* Motion simulation for systematic and random errors.
-*ITK-based algorithms for translation, rigid, affine, demons, and B-spline registration
+* Dose population histogram generation based on motion simulation.
-*Pipelined, multi-stage registration framework with seamless conversion between most algorithms and transform types
+* A complete simulation module for margin calculation.
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|Modules}}
-*[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]
-*[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]
+*[[Documentation/{{documentation/version}}/Modules/Sequences|Sequences]]
-*[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]
+*[[Documentation/{{documentation/version}}/Modules/SequenceBrowser|Sequence browser]]
 <!-- ---------------------------- -->
@@ Line 72: / Line 67: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|References}}
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-section|Information for Developers}}
-{{documentation/{{documentation/version}}/extension-developerinfo}}
+* Source code: https://subversion.assembla.com/svn/margincalculator/trunk/MarginCalculator/
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/extension-footer}}
 <!-- ---------------------------- -->