Documentation/4.3/Registration/RegistrationLibrary - Revision history

Meier at 20:13, 9 July 2015

2015-07-09T20:13:02Z

Meier at 20:10, 9 July 2015

2015-07-09T20:10:42Z

Meier at 20:10, 9 July 2015

2015-07-09T20:10:03Z

Meier at 20:09, 9 July 2015

2015-07-09T20:09:23Z

Meier at 20:08, 9 July 2015

2015-07-09T20:08:55Z

Meier at 20:08, 9 July 2015

2015-07-09T20:08:29Z

Meier at 20:07, 9 July 2015

2015-07-09T20:07:59Z

UpdateBot: Nightly -> 4.3

2013-09-05T03:40:15Z

Nightly -> 4.3

New page

<noinclude>{{documentation/versioncheck}}</noinclude>
*[[Documentation/{{documentation/version}}/FAQ|'''Slicer Registration FAQ''']]: answers to the most common questions/problems, including cookbook recipes for common registration steps.
*[[Documentation/{{documentation/version}}/RegistrationVideoTutorials|'''Slicer Registration Training Videos''']]: brief videos/screencasts showing step-by-step approaches to the most common tasks
*[[Documentation/{{documentation/version}}/Modules/Resampling|'''Slicer Resampling Overview''']] a summary of how 3DSlicer handles transforms and how image resampling is performed.]]

----

*[[Image:UnderConstruction.png|80px]]Please note this page is under construction and some cases/descriptions may be incomplete.

*case description, step by step instructions, screencasts: click on the thumbnail image,
*download image data: click on download link, which fetches .mrb file from MIDAS
*main module documentation: click on the link in the toolbox column.
*sort the table by a category: click on the sort icon in the column header
 

{| class="wikitable sortable labelpage labelpagetable" border="1"
|-
! ID
! scope="col" width="400px" |Description (click on image to access case page)
! Structure
! Type of Registration
! Modality
! Download
|-
| align="center" | 1
|
{|
| [[Image:RegLib_C01_Thumb1.png|200px|lleft|RegLib C01: MR Meningioma|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C01]]
|Align baseline MR of meningioma with follow-up.
|}
| brain tumor
| rigid+ affine
| MRI
|[http://slicer.kitware.com/midas3/download/?items=115233 '''RegLib_C01.mrb'''] (input data only , Slicer mrb file. 13 MB) 
|-
| align="center" | 2
|
{|
| [[Image:RegLib_C02_Thumb3.png|200px|lleft|RegLib C02: MR Meningioma|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C02]]
|Align MRI FLAIR with lesion segmentation to T1
|}
| multiple sclerosis
| affine
| MRI
|[http://slicer.kitware.com/midas3/download/?items=115374 '''RegLib_C02.mrb'''] (input data only , Slicer mrb file. 19 MB) 
[http://slicer.kitware.com/midas3/download/?items=115373 '''RegLib_C02_full.mrb'''] (input data + results, Slicer mrb file. 19 MB). 
|-
| align="center" | 3
|
{|
| [[Image:RegLib_C03_DTIVol_axial.png|200px|lleft|RegLib C03: DTI alignment|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C03]]
|Align DTI volume with structural reference scan (T2)
|}
| brain tumor
| affine + nonrigid
| DTI
|[http://slicer.kitware.com/midas3/download/?items=95490 '''RegLib_C03.mrb'''] (input data only , Slicer mrb file. 50 MB) 
[http://slicer.kitware.com/midas3/download/?items=95491 '''RegLib_C03_full.mrb'''] (input data + results, Slicer mrb file. 108 MB). 
|-
| align="center" | 4
|
{|
| [[Image:RegLib_C04_Thumb1.jpg|200px|lleft|RegLib C04: MS longitudinal+multispectral|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C04]]
|Align both intra- and inter-exam MRI of a single subject.
|}
| multiple sclerosis
| affine
| MRI
|[http://slicer.kitware.com/midas3/download/?items=116480 '''RegLib_C04.mrb'''] (input data only , Slicer mrb file. 19 MB) 
[http://slicer.kitware.com/midas3/download/?items=116479 '''RegLib_C04_full.mrb'''] (input data + results, Slicer mrb file. 19 MB). 
|-
| align="center" | 6
|
{|
| [[Image:RegLib_C06_Thumb0.png|200px|lleft|RegLib C06: Breast MRI pre/post|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C06]]
|Align pre- and post-Rx breast MRI
|}
| breast cancer
| affine+nonrigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=116852 '''RegLib_C06.mrb'''] (input data only , Slicer mrb file. 40 MB) 
[http://slicer.kitware.com/midas3/download/?items=116851 '''RegLib_C06_full.mrb'''] (input data + results, Slicer mrb file. 65 MB). 
|-
| align="center" | 7
|
{|
| [[Image:RegLib_C07_Thumb1.png|200px|lleft|RegLib C07: Prostate MRI pre/post|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C07]]
|Align baseline and follow-up prostate MRI
|}
| prostate cancer
| affine+nonrigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=116856 '''RegLib_C07.mrb'''] (input data only , Slicer mrb file. 8 MB) 
[http://slicer.kitware.com/midas3/download/?items=116855 '''RegLib_C07_full.mrb'''] (input data + results, Slicer mrb file. 27 MB). 
|-
| align="center" | 9
|
{|
| [[Image:RegLib_C09_Thumb2.png|200px|lleft|RegLib C09: fMRI to T1|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C09]]
|Align fMRI with structural MRI
|}
|
| rigid+nonrigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=116858 '''RegLib_C09.mrb'''] (input data only , Slicer mrb file. 40 MB) 
[http://slicer.kitware.com/midas3/download/?items=116857 '''RegLib_C09_full.mrb'''] (input data + results, Slicer mrb file. 182 MB). 
|-
| align="center" | 10
|
{|
| [[Image:RegLib_C10_Thumb2.png|200px|lleft|RegLib C10: Atlas to T1|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C10]]
|Align probabilistic/group atlas with T1
|}
|
| rigid+nonrigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=116868 '''RegLib_C10.mrb'''] (input data only , Slicer mrb file. 12 MB) 
[http://slicer.kitware.com/midas3/download/?items=116867 '''RegLib_C10_full.mrb'''] (input data + results, Slicer mrb file. 50 MB). 
|-
| align="center" | 12
|
{|
| [[Image:RegLib_C12_Thumb1.png|200px|lleft|RegLib C12: Abdominal MR-CT|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C12]]
|Align abdominal MRI with CT
|}
| liver tumor
| affine + nonrigid
| CT
|[http://slicer.kitware.com/midas3/download/?items=103749 '''RegLib_C12.mrb'''] (input data only , Slicer mrb file. 35 MB) 
[http://slicer.kitware.com/midas3/download/?items=103748 '''RegLib_C12_full.mrb'''] (input data + results, Slicer mrb file. 68 MB). 
|-
| align="center" | 14
|
{|
| [[Image:RegLib_C14_Thumb0.png|200px|lleft|RegLib C14: MR-PET|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C14]]
|Align brain PET with low-res MRI
|}
| N/A
| affine + nonrigid
| CT
|[http://slicer.kitware.com/midas3/download/?items=103751'''RegLib_C14.mrb'''] (input data only , Slicer mrb file. 9 MB) 
[http://slicer.kitware.com/midas3/download/?items=103750 '''RegLib_C14_full.mrb'''] (input data + results, Slicer mrb file. 22 MB). 
|-
| align="center" | 15
|
{|
| [[Image:RegLib_C15_Thumb1.png|200px|lleft|RegLib C15: AC-PC|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C15]]
| AC-PC alignment of brain MRI
|}
| N/A
| affine + nonrigid
| CT
|[http://slicer.kitware.com/midas3/download/?items=103755'''RegLib_C15.mrb'''] (input data only (incl. example fiducials) , Slicer mrb file. 22 MB) 
[http://slicer.kitware.com/midas3/download/?items=103754 '''RegLib_C15_full.mrb'''] (input data + results, Slicer mrb file. 22 MB). 
|-
| align="center" | 17
|
{|
| [[Image:RegLib_C17_Thumb1.png|200px|lleft|RegLib C17: Abdominal MR-CT|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C17]]
| Preop MRI to intraop interventional CT
|}
| abdominal
| affine
| CT
|[http://slicer.kitware.com/midas3/download/?items=115376 '''RegLib_C17.mrb'''] (input data only (incl. example fiducials) , Slicer mrb file. 10 MB) 
[http://slicer.kitware.com/midas3/download/?items=115375 '''RegLib_C17_full.mrb'''] (input data + results, Slicer mrb file. 12 MB). 
|-
| align="center" | 20
|
{|
| [[Image:RegLib_C20_Thumb1.png|200px|left|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C20]]
| Alignment of PET/CT follow-up to baseline
|}
| full body
| rigid + affine + nonrigid
| PET/CT
|[http://slicer.kitware.com/midas3/download/?items=116262 '''RegLib_C20.mrb'''] (input data only , Slicer mrb file. 76 MB) 
[http://slicer.kitware.com/midas3/download/?items=116261 '''RegLib_C20_full.mrb'''] (input data + results, Slicer mrb file. 171 MB). 
|-
| align="center" | 21
|
{|
| [[Image:RegLib_C21_Thumb1.png|200px|left|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C21]]
| Alignment of knee MRI (2 different subjects)
|}
| knee
| rigid + affine + nonrigid
| MRI
|[http://slicer.kitware.com/midas3/download/?items=115179 '''RegLib_C21.mrb'''] (input data + results, Slicer mrb file. 12 MB). 
|-
| align="center" | 27
|
{|
| [[Image:RegLib_C27_Thumb4.png|200px|left|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C27]]
| Alignment of DTI scan to structural reference T1-SPGR for surgical planning (tumor resection)
|}
| brain tumor
| affine + nonrigid
| DTI
|[http://slicer.kitware.com/midas3/download/?items=100678 '''RegLib_C27.mrb'''] (input data, Slicer mrb file 50MB) 
[http://slicer.kitware.com/midas3/download/?items=95493 '''RegLib_C27_full.mrb'''] (input data + results, Slicer mrb file 114MB) 
|-
| align="center" | 29
|
{|
| [[Image:RegLib_C29_Thumb.png|200px|left|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C29]]
|Alignment of DTI scan to structural reference T2/T1-SPGR for surgical planning (tumor resection)
|}
| brain tumor
| affine + nonrigid
| DTI
|[http://slicer.kitware.com/midas3/download/?items=95265 '''RegLib_C29_raw.mrb'''] (input data, Slicer mrb file. 71 MB). 
[http://slicer.kitware.com/midas3/download/?items=95058 '''RegLib_C29_full.mrb'''] (input data+results, Slicer mrb file. 124 MB). 
|-
| align="center" | 32
|
{|
| [[Image:RegLib_C32_Thumb4.png|200px|left|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C32]]
| Alignment of structural reference T1 to a DTI scan
|}
|
| affine + nonrigid
| DTI
|[http://slicer.kitware.com/midas3/download/?items=103594 '''RegLib_C32.mrb'''] (input data, Slicer mrb file. 31 MB). 
[http://slicer.kitware.com/midas3/download/?items=103593 '''RegLib_C32_full.mrb'''] (input data+results, Slicer mrb file. 36 MB). 
|-
| align="center" | 38
|
{|
| [[Image:RegLib_C38_Thumb5.png|200px|left|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C38]]
| Alignment of multi-sequence MRI
|}
|traumatic brain injury (TBI)
|rigid
|MRI
|[http://slicer.kitware.com/midas3/download/?items=103791 '''RegLib_C38.mrb'''] (input data, Slicer mrb file. 42 MB). 
|}

← Older revision		Revision as of 20:10, 9 July 2015
Line 5:		Line 5:

	* [[Documentation:4.2:Registration:RegistrationLibrary:RegLib_C01\|Case C01]]		* [[Documentation:4.2:Registration:RegistrationLibrary:RegLib_C01\|Case C01]]
		+	[[Documentation:4.3:Registration:RegistrationLibrary:RegLib_C01\|Case C01]]
		+	[[Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C01\|Case C01]]
		+	[[Documentation:3.6:Registration:RegistrationLibrary:RegLib_C01\|Case C01]]

	----		----

@@ Line 4: / Line 4: @@
 *[[Documentation/{{documentation/version}}/Modules/Resampling|'''Slicer Resampling Overview''']] a summary of how 3DSlicer handles transforms and how image resampling is performed.]]
-* [[Image:RegLib_C01_Thumb1.png|200px|lleft|RegLib C01: MR Meningioma|link=Documentation:nightly:Registration:RegistrationLibrary:RegLib_C01]]
+* [[Documentation:4.2:Registration:RegistrationLibrary:RegLib_C01|Case C01]]
 ----

@@ Line 4: / Line 4: @@
 *[[Documentation/{{documentation/version}}/Modules/Resampling|'''Slicer Resampling Overview''']] a summary of how 3DSlicer handles transforms and how image resampling is performed.]]
-* [[Image:RegLib_C01_Thumb1.png|200px|lleft|RegLib C01: MR Meningioma|link=Documentation:4.4:Registration:RegistrationLibrary:RegLib_C01]]
+* [[Image:RegLib_C01_Thumb1.png|200px|lleft|RegLib C01: MR Meningioma|link=Documentation:nightly:Registration:RegistrationLibrary:RegLib_C01]]
 ----

@@ Line 4: / Line 4: @@
 *[[Documentation/{{documentation/version}}/Modules/Resampling|'''Slicer Resampling Overview''']] a summary of how 3DSlicer handles transforms and how image resampling is performed.]]
-* [[Image:RegLib_C01_Thumb1.png|200px|lleft|RegLib C01: MR Meningioma|link=Documentation:4.3:Registration:RegistrationLibrary:RegLib_C01]]
+* [[Image:RegLib_C01_Thumb1.png|200px|lleft|RegLib C01: MR Meningioma|link=Documentation:4.4:Registration:RegistrationLibrary:RegLib_C01]]
 ----

@@ Line 4: / Line 4: @@
 *[[Documentation/{{documentation/version}}/Modules/Resampling|'''Slicer Resampling Overview''']] a summary of how 3DSlicer handles transforms and how image resampling is performed.]]
-* [[Image:RegLib_C01_Thumb1.png|200px|lleft|RegLib C01: MR Meningioma|link=Documentation:{{documentation/version}}:Registration:RegistrationLibrary:RegLib_C01]]
+* [[Image:RegLib_C01_Thumb1.png|200px|lleft|RegLib C01: MR Meningioma|link=Documentation:4.3:Registration:RegistrationLibrary:RegLib_C01]]
 ----

@@ Line 3: / Line 3: @@
 *[[Documentation/{{documentation/version}}/RegistrationVideoTutorials|'''Slicer Registration Training Videos''']]: brief videos/screencasts showing  step-by-step approaches to the most common tasks
 *[[Documentation/{{documentation/version}}/Modules/Resampling|'''Slicer Resampling Overview''']] a summary of how 3DSlicer handles transforms and how image resampling is performed.]]
 ----