Documentation/4.3/Modules/LAScarSegmenter - Revision history

Liangjiazhu at 04:10, 29 October 2013

2013-10-29T04:10:57Z

Liangjiazhu at 02:37, 29 October 2013

2013-10-29T02:37:18Z

UpdateBot: Nightly -> 4.3

2013-09-05T03:30:06Z

Nightly -> 4.3

New page

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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
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This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website]. 

Contributor: LiangJia Zhu, University of Alabama at Birmingham 
Contributor: Yi Gao, Brigham and Women's Hospital 
Contributor: Josh Cates, University of Utah 
Contributor: Alan Morris, University of Utah 
Contributor: Danny Perry, University of Utah 
Contributor: Greg Gardner, University of Utah 
Contributor: Rob MacLeod, University Utah 
Contributor: Allen Tannenbaum, University of Alabama at Birmingham 
Contact: LiangJia Zhu, <email>ljzhu@uab.edu</email> 
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{{documentation/{{documentation/version}}/module-section|Module Description}}
This module performs the segmentation of the left atrial scarring tissue from MR images. Assume that the endocardium of the left atrium is provided. The module starts with searching for the left atrial wall. Then, the scarring tissue is extracted by looking for brighter voxels inside the wall.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
This module is specifically designed for the segmentation of the left atrial scars from MR images.


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# Load source image [[file:LAScarSegSrc.png]]
# Load endocardium label image. Pulmonary veins need to be excluded from this label image [[file:LAScarSegLabel.png]]
# Select Segmentation->Left Atrial Segmentation module
# Choose the source and label image. Create/select an output image.
# Press the Apply button [[file:LAScarSegResult.png]]


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
The panel of this module is as follows: [[file:LAScarSegParameters.png‎|400px]]

The IO section has two input (Original Image and Endocardium Label Image) and one output.


{{documentation/{{documentation/version}}/module-section|Similar Modules}}
*[[Documentation/Nightly/Modules/SlicerModuleAutoScar|AutoScar]]


{{documentation/{{documentation/version}}/module-section|References}}
*Y. Gao, L. Zhu, A. Yezzi, S. Bouix , A. Tannenbaum. Scar Segmentation in DE-MRI, IEEE International Symposium on Biomedical Imaging (ISBI) , 2012.


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@@ Line 10: / Line 10: @@
 This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
-Contributor: Liangjia Zhu, University of Alabama at Birmingham <br>
+Contributor: Liangjia Zhu,  Stony Brook University <br>
-Contributor: Yi Gao, Brigham and Women's Hospital<br>
+Contributor: Yi Gao, University of Alabama at Birmingham <br>
 Contributor: Josh Cates, University of Utah <br>
 Contributor: Alan Morris, University of Utah <br>
@@ Line 17: / Line 17: @@
 Contributor: Greg Gardner, University of Utah <br>
 Contributor: Rob MacLeod, University Utah <br>
-Contributor: Allen Tannenbaum, University of Alabama at Birmingham <br>
+Contributor: Allen Tannenbaum, Stony Brook University  <br>
-Contact: Liangjia Zhu, <email>ljzhu@uab.edu</email><br>
+Contact: Liangjia Zhu, <email>liangjia.zhu@stonybrook.edu</email><br>
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@@ Line 10: / Line 10: @@
 This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
-Contributor: LiangJia Zhu, University of Alabama at Birmingham <br>
+Contributor: Liangjia Zhu, University of Alabama at Birmingham <br>
 Contributor: Yi Gao, Brigham and Women's Hospital<br>
 Contributor: Josh Cates, University of Utah <br>
@@ Line 18: / Line 18: @@
 Contributor: Rob MacLeod, University Utah <br>
 Contributor: Allen Tannenbaum, University of Alabama at Birmingham <br>
-Contact: LiangJia Zhu, <email>ljzhu@uab.edu</email><br>
+Contact: Liangjia Zhu, <email>ljzhu@uab.edu</email><br>
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 {{documentation/{{documentation/version}}/module-introduction-logo-gallery