https://www.slicer.org/w/index.php?action=history&feed=atom&title=Documentation%2F4.3%2FModules%2FHeterogeneityCAD
Documentation/4.3/Modules/HeterogeneityCAD - Revision history
2026-05-05T14:16:13Z
Revision history for this page on the wiki
MediaWiki 1.33.0
https://www.slicer.org/w/index.php?title=Documentation/4.3/Modules/HeterogeneityCAD&diff=38662&oldid=prev
Jayender at 19:21, 24 July 2014
2014-07-24T19:21:32Z
<p></p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 19:21, 24 July 2014</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3" >Line 3:</td>
<td colspan="2" class="diff-lineno">Line 3:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{documentation/{{documentation/version}}/module-header}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{documentation/{{documentation/version}}/module-header}}</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- ---------------------------- --></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- ---------------------------- --></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[Image:<del class="diffchange diffchange-inline">OpenCAD</del>.PNG|thumb|center|<del class="diffchange diffchange-inline">400px</del>|]]</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[Image:<ins class="diffchange diffchange-inline">HeterogeneityCAD</ins>.PNG|thumb|center|<ins class="diffchange diffchange-inline">500px</ins>|]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- ---------------------------- --></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- ---------------------------- --></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}</div></td></tr>
<tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l207" >Line 207:</td>
<td colspan="2" class="diff-lineno">Line 207:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>To be added so that developers can add their metrics. Also, we are validating the metrics - please use caution while using them.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>To be added so that developers can add their metrics. Also, we are validating the metrics - please use caution while using them.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">Download from: https://github.com/vnarayan13/Slicer-OpenCAD</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Source code: https://github.com/vnarayan13/Slicer-OpenCAD/tree/master/HeterogeneityCAD</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Source code: https://github.com/vnarayan13/Slicer-OpenCAD/tree/master/HeterogeneityCAD</div></td></tr>
</table>
Jayender
https://www.slicer.org/w/index.php?title=Documentation/4.3/Modules/HeterogeneityCAD&diff=38653&oldid=prev
Vnarayan at 16:57, 24 July 2014
2014-07-24T16:57:04Z
<p></p>
<a href="https://www.slicer.org/w/index.php?title=Documentation/4.3/Modules/HeterogeneityCAD&diff=38653&oldid=38567">Show changes</a>
Vnarayan
https://www.slicer.org/w/index.php?title=Documentation/4.3/Modules/HeterogeneityCAD&diff=38567&oldid=prev
Vnarayan at 19:47, 23 July 2014
2014-07-23T19:47:38Z
<p></p>
<a href="https://www.slicer.org/w/index.php?title=Documentation/4.3/Modules/HeterogeneityCAD&diff=38567&oldid=38494">Show changes</a>
Vnarayan
https://www.slicer.org/w/index.php?title=Documentation/4.3/Modules/HeterogeneityCAD&diff=38494&oldid=prev
Vnarayan: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'
2014-07-02T19:19:53Z
<p>Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'</p>
<p><b>New page</b></p><div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
[[Image:OpenCAD.PNG|thumb|center|400px|]]<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
Extension: [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]]<br><br />
This work is supported by NA-MIC, NCIGT, and the Slicer Community.<br><br />
Author: Vivek Narayan, Jayender Jagadeesan<br><br />
Contact: Jayender Jagadeesan <email> jayender@bwh.harvard.edu</email> <br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|namic}}|NA-MIC<br />
|{{collaborator|logo|ncigt}}|NCIGT<br />
|{{collaborator|logo|spl}}|SPL<br />
}}<br />
<br />
This project is supported by P41 RR019703/RR/NCRR NIH HHS/United States, P01 CA067165/CA/NCI NIH HHS/United States and P41 EB015898/EB/NIBIB NIH HHS/United States<br />
<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
The {{documentation/modulename}} module is an image feature extraction toolbox primarily to quantify the heterogeneity of tumor images and their label maps.<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Image Features and Metrics}}<br />
*First-Order and Distribution Statistics<br />
**Data Node <br />
**Voxel Count <br />
**Energy <br />
**Entropy <br />
**Minimum Intensity <br />
**Maximum Intensity <br />
**Mean Intensity <br />
**Median Intensity <br />
**Range <br />
**Mean Deviation <br />
**Root Mean Square <br />
**Standard Deviation <br />
**Skewness <br />
**Kurtosis <br />
**Variance <br />
**Uniformity<br />
<br />
*Shape and Morphology Metrics<br />
**Volume mm^3 <br />
**Volume cc <br />
**Surface Area mm^2 <br />
**Surface:Volume Ratio <br />
**Compactness 1 <br />
**Compactness 2 <br />
**Maximum 3D Diameter <br />
**Spherical Disproportion <br />
**Sphericity<br />
<br />
*Renyi Dimensions <br />
**Box-Counting Dimension <br />
**Information Dimension <br />
**Correlation Dimension<br />
<br />
*Geometrical Measures<br />
**Extruded Surface Area <br />
**Extruded Volume <br />
**Extruded Surface:Volume Ratio <br />
**Extruded Box-Dimension<br />
<br />
*Texture: Gray-Level Co-occurrence Matrix (GLCM)<br />
**Autocorrelation <br />
**Cluster Prominence <br />
**Cluster Shade <br />
**Cluster Tendency <br />
**Contrast <br />
**Correlation <br />
**Difference Entropy <br />
**Dissimilarity <br />
**Energy (GLCM) <br />
**Entropy(H) <br />
**Homogeneity 1 <br />
**Homogeneity 2 <br />
**Informational Measure of Correlation 1 (IMC1) <br />
**Informational Measure of Correlation 2 (IMC2) <br />
**Inverse Difference Moment Normalized (IDMN) <br />
**Inverse Difference Normalized (IDN) <br />
**Inverse Variance <br />
**Maximum Probability <br />
**Sum Average <br />
**Sum Entropy <br />
**Sum Variance <br />
**Variance (GLCM)<br />
<br />
*Texture: Gray-Level Run Length Matrix (GLRL)<br />
**Short Run Emphasis (SRE) <br />
**Long Run Emphasis (LRE) <br />
**Gray Level Non-Uniformity (GLN) <br />
**Run Length Non-Uniformity (RLN) <br />
**Run Percentage (RP) <br />
**Low Gray Level Run Emphasis (LGLRE) <br />
**High Gray Level Run Emphasis (HGLRE) <br />
**Short Run Low Gray Level Emphasis (SRLGLE) <br />
**Short Run High Gray Level Emphasis (SRHGLE) <br />
**Long Run Low Gray Level Emphasis (LRLGLE) <br />
**Long Run High Gray Level Emphasis (LRHGLE) <br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Data sets}}<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
{|<br />
|<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Quick Instructions for Use}}<br />
*Select a nrrd volume<br />
*Select a segmentation label map to use as ROI<br />
*Click "Apply HeterogeneityCAD"<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Output}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
<br />
<br />
<br />
Source code: https://github.com/vnarayan13/Slicer-OpenCAD<br />
<!-- ---------------------------- --><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
[[Category:Documentation/{{documentation/version}}/Modules/Quantification]]<br />
<!-- ---------------------------- --><br />
<!-- ---------------------------- --></div>
Vnarayan