Documentation/4.3/Modules/Growing - Revision history

Vboen at 19:01, 20 September 2013

2013-09-20T19:01:29Z

Vboen at 19:00, 20 September 2013

2013-09-20T19:00:56Z

Vboen at 19:00, 20 September 2013

2013-09-20T19:00:14Z

Vboen at 19:26, 18 September 2013

2013-09-18T19:26:41Z

Vboen at 17:02, 18 September 2013

2013-09-18T17:02:17Z

Vboen at 17:01, 18 September 2013

2013-09-18T17:01:59Z

Vboen at 15:36, 18 September 2013

2013-09-18T15:36:49Z

Vboen at 15:36, 18 September 2013

2013-09-18T15:36:32Z

Vboen at 15:30, 18 September 2013

2013-09-18T15:30:56Z

Vboen at 15:25, 18 September 2013

2013-09-18T15:25:24Z

@@ Line 11: / Line 11: @@
 |[[Image:BaselineSegmentationMaskCMFreg.png|thumb|280px|Baseline Segmentation Mask - Input Seg]]
 |[[Image:FollowupSegmentationMaskCMFreg.png|thumb|280px|Followup Segmentation Mask - Input Seg]]
 |[[Image:BaselineFollowupSCANRegisteredCMFreg2.png|thumb|280px|Baseline and Followup CBCT Scans - Baseline and Followup CBCT Scans Registered - Baseline Input Scan + Output Scan]]
 |}

@@ Line 11: / Line 11: @@
 |[[Image:BaselineSegmentationMaskCMFreg.png|thumb|280px|Baseline Segmentation Mask - Input Seg]]
 |[[Image:FollowupSegmentationMaskCMFreg.png|thumb|280px|Followup Segmentation Mask - Input Seg]]
-|[[Image:BaselineFollowupSCANRegisteredCMFreg2.png|thumb|280px|Baseline and Followup CBCT Scans - Baseline Input Scan + Followup Input Scan]]
+|[[Image:BaselineFollowupSCANRegisteredCMFreg2.png|thumb|280px|Baseline and Followup CBCT Scans - Baseline and Followup CBCT Scans Registered - Baseline Input Scan + Output Scan]]
-|[[Image:BaselineFollowupSCANRegisteredCMFreg.png|thumb|280px|Baseline and Followup CBCT Scans Registered - Baseline Input Scan + Output Scan]]
+|[[Image:BaselineFollowupSCANRegisteredCMFreg.png|thumb|280px|Baseline Input Scan + Followup Input Scan]]
 |}

@@ Line 11: / Line 11: @@
 |[[Image:BaselineSegmentationMaskCMFreg.png|thumb|280px|Baseline Segmentation Mask - Input Seg]]
 |[[Image:FollowupSegmentationMaskCMFreg.png|thumb|280px|Followup Segmentation Mask - Input Seg]]
-|[[Image:BaselineFollowupSCANCMFreg2.png|thumb|280px|Baseline and Followup CBCT Scans - Baseline Input Scan + Followup Input Scan]]
+|[[Image:BaselineFollowupSCANRegisteredCMFreg2.png|thumb|280px|Baseline and Followup CBCT Scans - Baseline Input Scan + Followup Input Scan]]
 |[[Image:BaselineFollowupSCANRegisteredCMFreg.png|thumb|280px|Baseline and Followup CBCT Scans Registered - Baseline Input Scan + Output Scan]]
 |}

@@ Line 19: / Line 19: @@
 ===Module Type & Category===
-Type: CLI
+Type: Extension
 Category: CBCT Scan Registration

@@ Line 6: / Line 6: @@
 {|
-|[[Image:NonGrowingInterface.png|thumb|280px|User Interface]]
+|[[Image:GrowingInterface.png|thumb|280px|User Interface]]
 |[[Image:BaselineCBCTCMFreg.png|thumb|280px|Baseline CBCT Scan - Input Scan]]
 |[[Image:FollowupCBCTCMFreg.png|thumb|280px|Follow up CBCT Scan - Input Scan]]
@@ Line 52: / Line 52: @@
 ** <span style="color:green">'''Output Registered Scan'''</span> [<span style="color:orange">--outputVolume</span>] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied.
-[[Image:NonGrowingInterface.png|thumb|280px|User Interface]]
+[[Image:GrowingInterface.png|thumb|280px|User Interface]]

← Older revision		Revision as of 15:36, 18 September 2013
Line 52:		Line 52:
	** <span style="color:green">'''Output Registered Scan'''</span> [<span style="color:orange">--outputVolume</span>] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied.		** <span style="color:green">'''Output Registered Scan'''</span> [<span style="color:orange">--outputVolume</span>] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied.

−	\|\|[[Image:GrowingInterface.png\|thumb\|280px\|User Interface]]	+	[[Image:GrowingInterface.png\|thumb\|280px\|User Interface]]

@@ Line 40: / Line 40: @@
 * <span style="color:blue">'''''Voxel Based Registration Options'''''</span>:
-** <span style="color:green">'''Include ScaleVersor3D registration phase'''</span> [<span style="color:orange">--useScaleVersor3D</span>] : Perform a ScaleVersor3D registration as part of the sequential registration steps.
+** <span style="color:green">'''Rigid + Scale (7DOF)'''</span> [<span style="color:orange">--useScaleVersor3D</span>] : Perform a ScaleVersor3D registration as part of the sequential registration steps.
-** <span style="color:green">'''Include ScaleSkewVersor3D registration phase'''</span> [<span style="color:orange">--useScaleSkewVersor3D</span>] : Perform a ScaleSkewVersor3D registration as part of the sequential registration steps.
+** <span style="color:green">'''Rigid + Skew + Scale (10DOF)'''</span> [<span style="color:orange">--useScaleSkewVersor3D</span>] : Perform a ScaleSkewVersor3D registration as part of the sequential registration steps.
-** <span style="color:green">'''Include Affine registration phase'''</span> [<span style="color:orange">--useAffine</span>] : Perform an Affine registration as part of the sequential registration steps.
+** <span style="color:green">'''Affine (12DOF)'''</span> [<span style="color:orange">--useAffine</span>] : Perform an Affine registration as part of the sequential registration steps.
 * <span style="color:blue">'''''Output Registration Matrix'''''</span>:

← Older revision		Revision as of 15:30, 18 September 2013
Line 53:		Line 53:

	\|\|[[Image:GrowingInterface.png\|thumb\|280px\|User Interface]]		\|\|[[Image:GrowingInterface.png\|thumb\|280px\|User Interface]]
−	\|}

@@ Line 36: / Line 36: @@
 ** <span style="color:green">'''Baseline Scan (fixed)'''</span> [<span style="color:orange">-f --fixedVolume</span>] : The fixed scan image for registration.
 ** <span style="color:green">'''Follow up Scan (moving)'''</span> [<span style="color:orange">-m --movingVolume</span>] : The moving scan image for registration.
-** <span style="color:green">'''Baseline Segmentation (fixed)'''</span> [<span style="color:orange">--fixedBinaryVolume</span>] : The fixed one label segmentation image for registration.
+** <span style="color:green">'''Baseline Segmentation (fixed)'''</span> [<span style="color:orange">--fixedBinaryVolume</span>] : The fixed one label segmentation image for registration used to specify the region of interest.
-** <span style="color:green">'''Follow up Segmentation (moving)'''</span> [<span style="color:orange">--movingBinaryVolume</span>] : The moving one label segmentation image for registration.
+** <span style="color:green">'''Follow up Segmentation (moving)'''</span> [<span style="color:orange">--movingBinaryVolume</span>] : The moving one label segmentation image for registration used to specify the region of interest.
 * <span style="color:blue">'''''Voxel Based Registration Options'''''</span>:
-** <span style="color:green">'''Include ScaleVersor3D registration phase'''</span> [<span style="color:orange">--useScaleVersor3D</span>] : Perform a ScaleVersor3D registration as part of the sequential registration steps.  This family of options superceeds the use of transformType if any of them are set. ''Default value: false''
+** <span style="color:green">'''Include ScaleVersor3D registration phase'''</span> [<span style="color:orange">--useScaleVersor3D</span>] : Perform a ScaleVersor3D registration as part of the sequential registration steps.
-** <span style="color:green">'''Include ScaleSkewVersor3D registration phase'''</span> [<span style="color:orange">--useScaleSkewVersor3D</span>] : Perform a ScaleSkewVersor3D registration as part of the sequential registration steps.  This family of options superceeds the use of transformType if any of them are set. ''Default value: false''
+** <span style="color:green">'''Include ScaleSkewVersor3D registration phase'''</span> [<span style="color:orange">--useScaleSkewVersor3D</span>] : Perform a ScaleSkewVersor3D registration as part of the sequential registration steps.
-** <span style="color:green">'''Include Affine registration phase'''</span> [<span style="color:orange">--useAffine</span>] : Perform an Affine registration as part of the sequential registration steps.  This family of options superceeds the use of transformType if any of them are set. ''Default value: false''
+** <span style="color:green">'''Include Affine registration phase'''</span> [<span style="color:orange">--useAffine</span>] : Perform an Affine registration as part of the sequential registration steps.
 * <span style="color:blue">'''''Output Registration Matrix'''''</span>: