Documentation/4.3/Modules/Downsize - Revision history

Vboen at 19:25, 18 September 2013

2013-09-18T19:25:58Z

Vboen at 19:00, 18 September 2013

2013-09-18T19:00:37Z

Vboen at 18:52, 18 September 2013

2013-09-18T18:52:54Z

Vboen at 18:52, 18 September 2013

2013-09-18T18:52:34Z

Vboen at 18:51, 18 September 2013

2013-09-18T18:51:55Z

Vboen: Created page with '{{documentation/versioncheck}} NOTOC ===Downsize=== Downsize {| |User Interface |[[Image:InputScanBadReso…'

2013-09-18T18:51:09Z

Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> __NOTOC__ ===Downsize=== Downsize {| |thumb|280px|User Interface |[[Image:InputScanBadReso…'

New page

<noinclude>{{documentation/versioncheck}}</noinclude>
__NOTOC__

===Downsize===
Downsize

{|
|[[Image:DownsizeInterface.png|thumb|280px|User Interface]]
|[[Image:InputScanBadResolution.png|thumb|280px|Input Scan Bad Voxel Based Resolution]]
|[[Image:OutputScanDownsized.png|thumb|280px|Output Scan Downsized]]

== General Information ==

===Module Type & Category===

Type: CLI

Category: CBCT Scan Registration pre steps

===Authors, Collaborators & Contact===

Author: Vinicius Boen

Contributors: Francois Budin (NIRAL, University of North Carolina), Martin Styner (NIRAL, University Of North Carolina), Beatriz Paniagua (NIRAL, University Of North Carolina), Lucia Cevidanes (University of Michigan - School of Dentistry)

Contact: vboen@umich.edu

===Module Description===
* '''''Input Parameters''''':
** '''Baseline Scan (fixed)''' [-f --fixedVolume] : The fixed scan image for registration.
** '''Follow up Scan (moving)''' [-m --movingVolume] : The moving scan image for registration.
** '''Baseline Segmentation (fixed)''' [--fixedBinaryVolume] : The fixed one label segmentation image for registration used to specify the region of interest.
** '''Follow up Segmentation (moving)''' [--movingBinaryVolume] : The moving one label segmentation image for registration used to specify the region of interest.

* '''''Voxel Based Registration Options''''':
** '''Rigid + Scale (7DOF)''' [--useScaleVersor3D] : Perform a ScaleVersor3D registration as part of the sequential registration steps.
** '''Rigid + Skew + Scale (10DOF)''' [--useScaleSkewVersor3D] : Perform a ScaleSkewVersor3D registration as part of the sequential registration steps.
** '''Affine (12DOF)''' [--useAffine] : Perform an Affine registration as part of the sequential registration steps.

* '''''Output Registration Matrix''''':
** '''Registration Matrix''' [-t --transformPath] : File name for the rigid component of the estimated registration matrix. Can be used to rigidly register the moving image to the fixed image.

* '''''Apply Registration Matrix''''':
** '''Input Segmentatiton to be Registered''' [--segmentation] : Input segmentation image to be modified with the registration matrix.
** '''Output Registered Scan''' [--segmentationOut] : Output segmentation image. This segmentaiton image is the 'Input Segmentation to be Registered' with the registration matrix already applied.
** '''Output Registered Scan''' [--outputVolume] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied.

[[Image:DownsizeInterface.png|thumb|280px|User Interface]]

@@ Line 29: / Line 29: @@
 ===Module Description===
 * <span style="color:blue">'''''Input Parameters'''''</span>:
-** <span style="color:green">'''Baseline Scan (fixed)'''</span> [<span style="color:orange">-f --fixedVolume</span>] : The fixed scan image for registration.
+** <span style="color:green">'''Size'''</span> [<span style="color:orange">-s --spacing</span>] : The value of each voxel resolution for 3 dimensions
-** <span style="color:green">'''Follow up Scan (moving)'''</span> [<span style="color:orange">-m --movingVolume</span>] : The moving scan image for registration.
+** <span style="color:green">'''Input Volume'''</span> [<span style="color:orange">index: 0</span>] : Input volume to be resampled.
-** <span style="color:green">'''Baseline Segmentation (fixed)'''</span> [<span style="color:orange">--fixedBinaryVolume</span>] : The fixed one label segmentation image for registration used to specify the region of interest.
+** <span style="color:green">'''Output Volume'''</span> [<span style="color:orange">index: 1</span>] : Resampled Output Volume
 [[Image:DownsizeInterface.png|thumb|280px|User Interface]]

@@ Line 9: / Line 9: @@
 |[[Image:InputVolumeBadResolutionCMFreg.png|thumb|280px|Input Scan Bad Voxel Based Resolution]]
 |[[Image:OutputScanDownsizedCMFreg.png|thumb|280px|Output Scan Downsized]]
+|}
 == General Information ==

@@ Line 7: / Line 7: @@
 {|
 |[[Image:DownsizeInterface.png|thumb|280px|User Interface]]
-|[[Image:InputScanBadResolutionCMFreg.png|thumb|280px|Input Scan Bad Voxel Based Resolution]]
+|[[Image:InputVolumeBadResolutionCMFreg.png|thumb|280px|Input Scan Bad Voxel Based Resolution]]
 |[[Image:OutputScanDownsizedCMFreg.png|thumb|280px|Output Scan Downsized]]

@@ Line 14: / Line 14: @@
 ===Module Type & Category===
-Type: CLI
+Type: Extension
-Category: CBCT Scan Registration pre steps
+Category: CBCT Scan Registration pre steps (voxel resolution)

Documentation/4.3/Modules/Downsize - Revision history

Vboen at 19:25, 18 September 2013

Vboen at 19:00, 18 September 2013

Vboen at 18:52, 18 September 2013

Vboen at 18:52, 18 September 2013

Vboen at 18:51, 18 September 2013

Vboen: Created page with '{{documentation/versioncheck}} __NOTOC__ ===Downsize=== Downsize {| |User Interface |[[Image:InputScanBadReso…'

Vboen: Created page with '{{documentation/versioncheck}} NOTOC ===Downsize=== Downsize {| |User Interface |[[Image:InputScanBadReso…'