Documentation/4.3/Modules/Contours - Revision history

Unknown user: Text replacement - "slicerWiki/index.php" to "wiki"

2019-11-21T17:04:49Z

Text replacement - "slicerWiki/index.php" to "wiki"

Pinter at 12:42, 23 March 2014

2014-03-23T12:42:57Z

Rankin at 16:00, 16 December 2013

2013-12-16T16:00:38Z

Pinter at 14:10, 9 December 2013

2013-12-09T14:10:30Z

Pinter: Short howto added (from patient hierarchy page)

2013-12-09T14:08:42Z

Short howto added (from patient hierarchy page)

UpdateBot: Nightly -> 4.3

2013-09-05T03:30:55Z

Nightly -> 4.3

New page

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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
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This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br>
Author: Csaba Pinter (PerkLab, Queen's University)<br>
Contact: Csaba Pinter, <email>pinter@cs.queensu.ca</email><br>
[http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerRT Back to SlicerRT home]
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|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}
|{{collaborator|logo|sparkit}}|{{collaborator|longname|sparkit}}
|{{collaborator|logo|ocairo}}|{{collaborator|longname|ocairo}}
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{{documentation/{{documentation/version}}/module-section|Module Description}}
The {{documentation/modulename}} module manages contours and contour hierarchies.


{{documentation/{{documentation/version}}/module-section|Use Cases}}
* Load as ribbon, then compute DVH; the user wants to see the contours in 3D
* Edit contour 1, edit contour 2; see contour 1 while editing contour 2
* Create contour node, convert it to (empty) labelmap; do contouring on the labelmapo representation; convert to model
* Create/load labelmap or surface, create Contour node from that in Patient Hierarchy module

{|align="center"
|[[File:SlicerRT0.5 Contours.png|thumb|720px| Contours module GUI]]
|[[File:SlicerRT_ContourRepresentations.png|thumb|704px| Contours representations]]
|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}
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{{documentation/{{documentation/version}}/module-section|Panels and their use}}
* Current contour(s): Currently selected contour node (vtkMRMLContourNode) or conotur hierarchy node (vtkMRMLContourHierarchyNode)
* Active representation: The active representation ('''Ribbon model / Indexed labelmap / Closed surface model''') of the selected contour. If a hierarchy is selected in which the active representations of the contained contours do not match, '''Various''' is indicated
* Change active representation: This box contains controls to convert from one representation to another



{{documentation/{{documentation/version}}/module-section|Similar Modules}}
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{{documentation/{{documentation/version}}/module-section|References}}
Issue on SlicerRT ticketing system [https://www.assembla.com/spaces/slicerrt/tickets/137 here]


{{documentation/{{documentation/version}}/module-section|Information for Developers}}


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@@ Line 29: / Line 29: @@
 * Edit contour 1, edit contour 2; see contour 1 while editing contour 2
 * Create contour node, convert it to (empty) labelmap; do contouring on the labelmapo representation; convert to model
-* Create/load labelmap or surface, create Contour node from that in Patient Hierarchy module
+* Create/load labelmap or surface, create Contour node from that in Subject Hierarchy module
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@@ Line 45: / Line 45: @@
 ; Create contour from scratch
 : In Contours module select 'Create new Contour' in the contour selector drop-down to create a new contour
-: In Patient Hierarchy module drag&drop new contour from 'Potential patient hierarchy nodes' list to under a structure set in the tree
+: In Subject Hierarchy module drag&drop new contour from 'Potential subject hierarchy nodes' list to under a structure set in the tree
 : The default representation is an empty Ribbon model. It can be converted to Indexed labelmap in the Contours module and then the labelmap '''can be edited in the Editor module'''
 ; Create contour from labelmap volume or model
-: In Patient Hierarchy module drag&drop the existing representation (labelmap or model) from 'Potential patient hierarchy nodes' list to under a structure set in the tree. This way an encapsulating Contour node gets created and associated to the corresponding color table
+: In Subject Hierarchy module drag&drop the existing representation (labelmap or model) from 'Potential subject hierarchy nodes' list to under a structure set in the tree. This way an encapsulating Contour node gets created and associated to the corresponding color table
 ; Create new Structure set from scratch

@@ Line 53: / Line 53: @@
 ; Create new Structure set from scratch
 : Right-click on an existing Study node and select 'Create child structure set'. This menu item is only available for Study level nodes
 <!-- ---------------------------- -->

@@ Line 46: / Line 46: @@
 : In Contours module select 'Create new Contour' in the contour selector drop-down to create a new contour
 : In Patient Hierarchy module drag&drop new contour from 'Potential patient hierarchy nodes' list to under a structure set in the tree
-: The default representation is an empty Ribbon model. It can be converted to Indexed labelmap in the Contours module and then the labelmap can be edited in the Editor module
+: The default representation is an empty Ribbon model. It can be converted to Indexed labelmap in the Contours module and then the labelmap '''can be edited in the Editor module'''
 ; Create contour from labelmap volume or model

@@ Line 11: / Line 11: @@
 Author: Csaba Pinter (PerkLab, Queen's University)<br>
 Contact: Csaba Pinter, <email>pinter@cs.queensu.ca</email><br>
-[http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerRT Back to SlicerRT home]
+[http://www.slicer.org/wiki/Documentation/Nightly/Extensions/SlicerRT Back to SlicerRT home]
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 {{documentation/{{documentation/version}}/module-introduction-logo-gallery

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 {{documentation/{{documentation/version}}/module-section|Tutorials}}
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