https://www.slicer.org/w/index.php?action=history&feed=atom&title=Documentation%2F4.3%2FFAQ%2FRegistration 2026-04-05T04:54:17Z Revision history for this page on the wiki MediaWiki 1.33.0 https://www.slicer.org/w/index.php?title=Documentation/4.3/FAQ/Registration&diff=61655&oldid=prev 2019-11-21T17:01:47Z

<p>Text replacement - &quot;slicerWiki/index.php&quot; to &quot;wiki&quot;</p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 17:01, 21 November 2019</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l482" >Line 482:</td> <td colspan="2" class="diff-lineno">Line 482:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Slice views: Slicer sets the overall field of view based on the image selected as &quot;background&quot;. If the image in the foreground extends beyond that region it will be clipped. You can easily fix/test that by switching foreground and background volumes.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Slice views: Slicer sets the overall field of view based on the image selected as &quot;background&quot;. If the image in the foreground extends beyond that region it will be clipped. You can easily fix/test that by switching foreground and background volumes.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>If you already created a resampled version of the registered image, that may also have been cropped,because it sets the field of view based on the reference image (which is the fixed image usually). If you place your resampled image in the background and still see cropped edges, then that's what happened. In that case either use a different reference image for resampling or no reference at all and specify the result sizes manually, or use the  crop tool to expand the FOV as described below:</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>If you already created a resampled version of the registered image, that may also have been cropped,because it sets the field of view based on the reference image (which is the fixed image usually). If you place your resampled image in the background and still see cropped edges, then that's what happened. In that case either use a different reference image for resampling or no reference at all and specify the result sizes manually, or use the  crop tool to expand the FOV as described below:</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>#use the [http://www.slicer.org/<del class="diffchange diffchange-inline">slicerWiki/index.php</del>/Documentation/Nightly/Modules/Crop_Volume CropVolume module] to over-crop the reference image (define ROI to cover the field of view you want to have in the resampled volume). You will need to use interpolated crop mode, so the resolution will not match the original reference volume.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>#use the [http://www.slicer.org/<ins class="diffchange diffchange-inline">wiki</ins>/Documentation/Nightly/Modules/Crop_Volume CropVolume module] to over-crop the reference image (define ROI to cover the field of view you want to have in the resampled volume). You will need to use interpolated crop mode, so the resolution will not match the original reference volume.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>#Use the result of the cropping operation as the reference for [http://www.slicer.org/<del class="diffchange diffchange-inline">slicerWiki/index.php</del>/Documentation/Nightly/Modules/BRAINSResample BRAINSResample module] (you will need to specify the moving volume, output volume, and the transform produced by the BRAINS registration module).</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>#Use the result of the cropping operation as the reference for [http://www.slicer.org/<ins class="diffchange diffchange-inline">wiki</ins>/Documentation/Nightly/Modules/BRAINSResample BRAINSResample module] (you will need to specify the moving volume, output volume, and the transform produced by the BRAINS registration module).</div></td></tr> </table>

Grundlett https://www.slicer.org/w/index.php?title=Documentation/4.3/FAQ/Registration&diff=35442&oldid=prev 2013-09-05T03:43:47Z

<p>Nightly -&gt; 4.3</p> <a href="https://www.slicer.org/w/index.php?title=Documentation/4.3/FAQ/Registration&amp;diff=35442">Show changes</a>

UpdateBot