Documentation/4.3/Extensions/OpenCAD - Revision history

Vnarayan at 17:02, 24 July 2014

2014-07-24T17:02:17Z

Vnarayan at 19:22, 2 July 2014

2014-07-02T19:22:13Z

Jayender at 04:00, 30 April 2014

2014-04-30T04:00:15Z

Jayender at 03:59, 30 April 2014

2014-04-30T03:59:04Z

Jayender at 03:57, 30 April 2014

2014-04-30T03:57:23Z

Jayender at 03:21, 30 April 2014

2014-04-30T03:21:49Z

Vnarayan at 17:58, 28 April 2014

2014-04-28T17:58:40Z

Jayender at 22:30, 25 April 2014

2014-04-25T22:30:25Z

Jayender at 22:18, 25 April 2014

2014-04-25T22:18:08Z

Jayender at 22:17, 25 April 2014

2014-04-25T22:17:18Z

@@ Line 21: / Line 21: @@
 {{documentation/{{documentation/version}}/module-introduction-end}}
 <!-- ----------------------------  -->
 {{documentation/{{documentation/version}}/extension-section|Modules}}
-*[[Documentation/{{documentation/version}}/Modules/SegmentCAD|SegmentCAD: Segmentation from DCE-MRI]]
+*[[Documentation/{{documentation/version}}/Modules/SegmentCAD|SegmentCAD: Tumor Segmentation from DCE-MRI]]
-*[[Documentation/{{documentation/version}}/Modules/HeterogeneityCAD|HeterogeneityCAD: Analyze Heterogeneity of Tumor Images and their Parameter Maps using various metrics (distribution statistics, texture-based, fractal dimensions, geometric measures, etc)]]
+*[[Documentation/{{documentation/version}}/Modules/HeterogeneityCAD|HeterogeneityCAD: Analyze Heterogeneity of Tumor Images and their Parameter Maps using various metrics)]]
 <!-- ----------------------------  -->
 {{documentation/{{documentation/version}}/extension-section|Extension Description}}
-*The SegmentCAD modules is designed to segment tumors from DCE-MRI datasets which include pre-contrast image and post-contrast images at different time points. {{documentation/modulename}} uses blackbox methods to calculate the wash-in and wash-out slopes from the time-intensity curves. The segmentation output is a Label Map with red, yellow, and blue colors respectively identifying washout (Type III), plateau (Type II), and persistent (Type I) voxels.
+*The SegmentCAD module is designed to segment tumors from DCE-MRI datasets which include a pre-contrast image and post-contrast images at different time points.
-*The HeterogeneityCAD module is under development and will apply metrics to analyze the heterogeneity of tumor images and their parameter maps.
+**SegmentCAD uses blackbox methods to calculate the wash-in and wash-out slopes from the time-intensity curves.
 <!-- ----------------------------
@@ Line 41: / Line 50: @@
 *SegmentCAD
 **[[Media:SegmentCADTutorial.pptx|SegmentCAD Tutorial (pptx)]]‎
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Data sets}}
 *SegmentCAD
-**[[Media:Breast-data1.zip|Breast DCE-MRI Data Set 1 (zip file containing the nrrd volumes for the SegmentCAD tutorial)]]‎
+**[[Media:Breast-data1.zip|Breast DCE-MRI Data Set 1 (zip file containing the nrrd volumes for the  tutorial)]]‎
 **[[Media:Breast-data2.zip|Breast DCE-MRI Data Set 2 (zip file containing additional test set of nrrd volumes)]]‎
 *HeterogeneityCAD
-**Under Development
+**[[Media:BreastHeteroCADData.zip|Breast DCE-MRI Data Set (zip file containing the nrrd volumes for the  tutorial)]]‎
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Quick Instructions for Use}}
-*[[Documentation/{{documentation/version}}/Modules/SegmentCAD|SegmentCAD]] (Click on link for greater details)
+*[[Documentation/{{documentation/version}}/Modules/SegmentCAD|SegmentCAD (Click link for detailed description)]]
 **Select the pre-contrast volume
 **Select the first post-contrast volume
@@ Line 60: / Line 69: @@
 **Select the fourth post-contrast volume
 **Create or select a label map volume node to represent the output of the segmentation
-**Click "Apply SegmentCAD Segmentation"
+**Click "Apply OpenCAD Segmentation"
-*HeterogeneityCAD
+*[[Documentation/{{documentation/version}}/Modules/HeterogeneityCAD|HeterogeneityCAD (Click link for detailed description)]]
-**Under Development
+**Add an image or parameter map (.nrrd file) to the Nodes List
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Similar Modules}}
-N/A
+*SegmentCAD:
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|References}}
-N/A
+* J. Jayender, E. Gombos, S. Chikarmane, D. Dabydeen, F. A. Jolesz, and K. G. Vosburgh, “Statistical Learning Algorithm for In-situ and Invasive Breast Carcinoma Segmentation”, Journal of Computerized Medical Imaging and Graphics, vol. 37, no. 4, pp. 281-292, 2013
 <!-- ---------------------------- -->

@@ Line 25: / Line 25: @@
 {{documentation/{{documentation/version}}/extension-section|Modules}}
 *[[Documentation/{{documentation/version}}/Modules/SegmentCAD|SegmentCAD: Segmentation from DCE-MRI]]
-*HeterogeneityCAD (under development)
+*[[Documentation/{{documentation/version}}/Modules/HeterogeneityCAD|HeterogeneityCAD: Analyze Heterogeneity of Tumor Images and their Parameter Maps using various metrics (distribution statistics, texture-based, fractal dimensions, geometric measures, etc)]]
 <!-- ----------------------------  -->

@@ Line 39: / Line 39: @@
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
 *SegmentCAD
-**[[Media:SegmentCADTutorial.pptx|{{documentation/modulename}} Tutorial (pptx)]]‎
+**[[Media:SegmentCADTutorial.pptx|SegmentCAD Tutorial (pptx)]]‎
 *HeterogeneityCAD
 **Under Development

@@ Line 39: / Line 39: @@
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
 *SegmentCAD
-**[[Media:OpenCADTutorial.pptx|{{documentation/modulename}} Tutorial (pptx)]]‎
+**[[Media:SegmentCADTutorial.pptx|{{documentation/modulename}} Tutorial (pptx)]]‎
 *HeterogeneityCAD
 **Under Development

@@ Line 21: / Line 21: @@
 {{documentation/{{documentation/version}}/module-introduction-end}}
 <!-- ----------------------------  -->
@@ Line 26: / Line 31: @@
 *The SegmentCAD modules is designed to segment tumors from DCE-MRI datasets which include pre-contrast image and post-contrast images at different time points. {{documentation/modulename}} uses blackbox methods to calculate the wash-in and wash-out slopes from the time-intensity curves. The segmentation output is a Label Map with red, yellow, and blue colors respectively identifying washout (Type III), plateau (Type II), and persistent (Type I) voxels.
 *The HeterogeneityCAD module is under development and will apply metrics to analyze the heterogeneity of tumor images and their parameter maps.
 <!-- ----------------------------
@@ Line 40: / Line 40: @@
 *SegmentCAD
 **[[Media:OpenCADTutorial.pptx|{{documentation/modulename}} Tutorial (pptx)]]‎
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Data sets}}
 *SegmentCAD
-**[[Media:Breast-data1.zip|Breast DCE-MRI Data Set 1 (zip file containing the nrrd volumes for the {{documentation/modulename}} tutorial)]]‎
+**[[Media:Breast-data1.zip|Breast DCE-MRI Data Set 1 (zip file containing the nrrd volumes for the SegmentCAD tutorial)]]‎
 **[[Media:Breast-data2.zip|Breast DCE-MRI Data Set 2 (zip file containing additional test set of nrrd volumes)]]‎
+*HeterogeneityCAD
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Quick Instructions for Use}}
@@ Line 56: / Line 59: @@
 **Select the fourth post-contrast volume
 **Create or select a label map volume node to represent the output of the segmentation
-**Click "Apply OpenCAD Segmentation"
+**Click "Apply SegmentCAD Segmentation"
+*HeterogeneityCAD
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Similar Modules}}

@@ Line 109: / Line 109: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Module Output}}
-[[Image:OpenCAD-Output.png|thumb|center|500px|{{documentation/modulename}} Module Output ]]
+[[Image:OpenCAD-Output.png|thumb|center|650px|{{documentation/modulename}} Module Output ]]
 <!-- ---------------------------- -->