https://www.slicer.org/w/index.php?action=history&feed=atom&title=Documentation%2F4.2%2FSlicerApplication%2FSupportedDataFormat
Documentation/4.2/SlicerApplication/SupportedDataFormat - Revision history
2026-05-04T01:53:56Z
Revision history for this page on the wiki
MediaWiki 1.33.0
https://www.slicer.org/w/index.php?title=Documentation/4.2/SlicerApplication/SupportedDataFormat&diff=32799&oldid=prev
UpdateBot: Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887
2013-06-14T07:45:50Z
<p>Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887</p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 07:45, 14 June 2013</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td>
<td colspan="2" class="diff-lineno">Line 1:</td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"><noinclude>{{documentation/versioncheck}}</noinclude></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- ---------------------------- --></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- ---------------------------- --></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{documentation/{{documentation/version}}/slicerapplication-header}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{documentation/{{documentation/version}}/slicerapplication-header}}</div></td></tr>
</table>
UpdateBot
https://www.slicer.org/w/index.php?title=Documentation/4.2/SlicerApplication/SupportedDataFormat&diff=28697&oldid=prev
UpdateBot: Nightly -> 4.2
2012-10-31T21:57:42Z
<p>Nightly -> 4.2</p>
<p><b>New page</b></p><div><!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/slicerapplication-header}}<br />
<!-- ---------------------------- --><br />
=File formats supported by Slicer {{documentation/version}}= <br />
{| style="margin: 1em auto 1em auto; border: 1px solid darkgray;"<br />
|-<br />
!Format<br />
!File Name Extensions<br />
!Read<br />
!Write<br />
!Module<br />
|-<br />
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Scenes<br />
! scope="col"| [[Documentation/{{documentation/version}}/Modules/Data|Data]]<br />
|-<br />
| MRML (Medical Reality Markup Language File)<br />
| .mrml<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|MRML file is a xml-formatted text file with scene metadata and pointers to externally stored data files. [[Documentation/{{documentation/version}}/Developers/MRML|Data Model]]<br />
|-<br />
| MRB (Medical Reality Bundle)<br />
| .mrb, .zip<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes (.mrb extension only)<br />
|MRB is a binary format encapsulating all scene data (bulk data and metadata). Internally it uses zip format. Any .zip file that contains a self-contained data tree including a .mrml file can be opened.<br />
|-<br />
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Raster Images<br><small>''this includes 2D and 3D images, and more complicated types such as DWI or DTI''</small><br />
! scope="col"| [[Documentation/{{documentation/version}}/Modules/Volumes|Volumes]]<br />
|-<br />
| [http://medical.nema.org/ DICOM]<br />
| .dcm ...<br />
|bgcolor="LightGreen" align="center"|yes<ref>For a number of dMRI formats we recommend use of the [[Documentation/{{documentation/version}}/Modules/DicomToNrrdConverter|DICOM to NRRD converter]] before loading the data into Slicer.</ref><br />
|bgcolor="#f34a33" align="center"|no<ref>Limited support for writing image volumes in DICOM format is provided by the [[Documentation/{{documentation/version}}/Modules/CreateDICOMSeries|Create DICOM Series]] module</ref><br />
|[[Documentation/{{documentation/version}}/Modules/DICOM|DICOM]], [[Documentation/{{documentation/version}}/Modules/DicomToNrrdConverter|DICOMToNRRDConverter]], [[Documentation/{{documentation/version}}/Modules/CreateDICOMSeries|CreateDICOMSeries]]<br />
|-<br />
| [http://teem.sourceforge.net/nrrd/format.html NRRD]<br />
| .nrrd, .nhdr<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| [http://www.itk.org/Wiki/MetaIO/Documentation MetaImage]<br />
| .mhd, .mha<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| [http://www.vtk.org/VTK/img/file-formats.pdf VTK]<br />
| .vtk<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| [http://www.grahamwideman.com/gw/brain/analyze/formatdoc.htm Analyze]<br />
| .hdr, .img, .img.gz<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| [http://nifti.nimh.nih.gov/nifti-1/ NifTI]<br />
| .nia, .nii, .nii.gz<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| BMP<br />
| .bmp<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| BioRad<br />
| .pic<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| Brains2<br />
| .mask<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| GIPL<br />
| .gipl .gipl.gz<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| JPEG<br />
| .jpg, .jpeg<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| LSM<br />
| .lsm<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| PNG<br />
| .png<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| Stimulate<br />
| .spr<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| TIFF<br />
| .tif, .tiff<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| MGH-NMR<br />
| .mgz<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Models<br />
! scope="col"| [[Documentation/{{documentation/version}}/Modules/Models|Models]]<br />
|-<br />
| [http://www.vtk.org/VTK/img/file-formats.pdf VTK Polygonal Data]<br />
| .vtk<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| [http://www.vtk.org/VTK/img/file-formats.pdf VTK XML Polygonal Data]<br />
| .vtp<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| STL<br />
| .stl<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| OBJ<br />
| .obj<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="#f34a33" align="center"|no<br />
|<br />
|-<br />
| Others (to be tested)<br />
| .g, .byu, .orig, .inflated, .sphere, .white, .smoothwm, .pial<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="#f34a33" align="center"|no<br />
|<br />
|-<br />
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Fiducials<br />
! scope="col"| [[Documentation/{{documentation/version}}/Modules/Annotations|Annotations]]<br />
|-<br />
| CSV<br />
| .fcsv<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| Text<br />
| .txt<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Transforms<br />
! scope="col"| [[Documentation/{{documentation/version}}/Modules/Transforms|Transforms]]<br />
|-<br />
| [http://www.itk.org/ItkSoftwareGuide.pdf Transform]<br />
| .tfm, .mat<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| Text<br />
| .txt<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Transfer Functions<br />
! scope="col"| [[Documentation/{{documentation/version}}/Modules/VolumeRendering|Volume Rendering]]<br />
|-<br />
| Volume Rendering properties<br />
| .vp<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
| Text<br />
| .txt<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Lookup tables<br />
! scope="col"| [[Documentation/{{documentation/version}}/Modules/Colors|Colors]]<br />
|-<br />
| [[Documentation/{{documentation/version}}/Modules/Colors#File_format|Text]]<br />
| .txt, .ctbl<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|-<br />
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Double Arrays<br />
!<br />
|-<br />
| CSV<br />
| .csv<br />
|bgcolor="LightGreen" align="center"|yes<br />
|bgcolor="LightGreen" align="center"|yes<br />
|<br />
|}<br />
<br />
<references/><br />
<br />
=References=<br />
* [http://www.vtk.org/Wiki/ITK_File_Formats ITK File Formats]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/slicerapplication-footer}}<br />
<!-- ---------------------------- --></div>
UpdateBot