Documentation/4.10/Training - Revision history

JChris.FillionR at 22:03, 22 November 2022

2022-11-22T22:03:36Z

JChris.FillionR at 21:59, 22 November 2022

2022-11-22T21:59:04Z

JChris.FillionR: Consolidated content of 4.10 and Nightly pages. This was done by saving the page source in text files and using visual diff and merge tool like "meld". Differences were resolved introspecting the wiki edit history.

2022-11-22T18:40:58Z

Consolidated content of 4.10 and Nightly pages. This was done by saving the page source in text files and using visual diff and merge tool like "meld". Differences were resolved introspecting the wiki edit history.

JChris.FillionR: /* Data Loading and 3D Visualization */

2022-11-22T17:03:18Z

Data Loading and 3D Visualization

Spujol: /* YouTube videos */

2022-04-23T19:43:15Z

YouTube videos

Spujol at 09:28, 28 March 2022

2022-03-28T09:28:15Z

Spujol: /* Image Phenotyping */

2021-04-14T13:07:27Z

Image Phenotyping

Spujol at 13:06, 14 April 2021

2021-04-14T13:06:56Z

Spujol at 12:35, 14 April 2021

2021-04-14T12:35:52Z

Spujol: /* Tutorials for software developers */

2021-04-09T14:00:09Z

Tutorials for software developers

@@ Line 1: / Line 1: @@
-<noinclude>{{Historical|Up-to-date training material can be found at [[Documentation/Nightly/Training]]}}
+<noinclude>{{Historical|Up-to-date training materials can be found at [[Documentation/Nightly/Training]]}}
 </noinclude>
 =Introduction: Slicer {{documentation/version}} Tutorials=

@@ Line 1: / Line 1: @@
-<noinclude>{{documentation/versioncheck}}
+<noinclude>{{Historical|Up-to-date training material can be found at [[Documentation/Nightly/Training]]}}
 </noinclude>
 =Introduction: Slicer {{documentation/version}} Tutorials=

@@ Line 77: / Line 77: @@
 | align="right" |
 [[Image:20180426_DataLoadingAndVisualizationTutorial.png|right|200px|]]
 [[Image:Slicer4DataLoading_tutorial.png|right|200px|]]
@@ Line 128: / Line 127: @@
 *Author: Andras Lasso, Csaba Pinter, Tamas Ungi, Csaba Pinter, Matthew Holden, Kyle Sunderland
 *Audience: Developers, Users
-*Based on: 3D Slicer version 4.8
+*Based on: 3D Slicer version 4.10
 | align="right" |
 [[Image:PerkLabSlicerProgrammingTutorial.png|right|250px|]]
 |}
+==Slicer Programming Tutorial==
 {| width="100%"
+|
-*The [https://spujol.github.io/SlicerProgrammingTutorial/ Slicer Programming tutorial] is an introduction to the Python Interactor and the Qt Widget toolkit in 3D Slicer.
+*The [https://spujol.github.io/SlicerProgrammingTutorial/ Slicer Programming tutorial] guides through the integration of a python module in Slicer. It provides an introduction to the Python Console and the Qt Widget toolkit in 3D Slicer.
 *Author: Sonia Pujol, Ph.D., Steve Pieper, Ph.D.
 *Audience: Developers
@@ Line 148: / Line 145: @@
 ==Slicer script repository==
-For additional Python scripts examples, please visit the [[Documentation/{{documentation/version}}/ScriptRepository|Script Repository page]]
+For additional Python scripts examples, please visit the [https://slicer.readthedocs.io/en/latest/developer_guide/script_repository.html Script repository].
 ==Developing and contributing extensions for 3D Slicer==
@@ Line 165: / Line 162: @@
+|
 *Segmentation for 3D printing: shows how to use the Segment Editor module for combining CAD designed parts with patient-specific models.
 **'''[[Documentation/{{documentation/version}}/Training#Segmentation_for_3D_printing|Segmentation for 3D printing Step-by-step tutorial]]'''. Author: Csaba Pinter, MSc
 **Audience: Users and developers interested in segmentation and 3D printing
 **Based on: 3D Slicer version 4.7
 | align="right" |[[Image:20170717_3DPrintingTutorialYoutube.PNG|280px]]
 |---
+|
-*'''[https://youtu.be/BJoIexIvtGo Video tutorial: Whole heart segmentation from cardiac CT]''' shows how to use the Segment Editor module for segmenting heart ventricles, atria, and great vessels from cardiac CT volumes.
+*'''[https://www.youtube.com/watch?v=BJoIexIvtGo Video tutorial: Whole heart segmentation from cardiac CT]''' shows how to use the Segment Editor module for segmenting heart ventricles, atria, and great vessels from cardiac CT volumes.
 **Author: Andras Lasso, PhD
 **Audience: Users who need to segment heart structures, for example for visualization, quantification, or simulation.
@@ Line 179: / Line 178: @@
 |---
+|
-*'''[https://spujol.github.io/SkullStrippingTutorial/ The Skull Stripping tutorial]''' shows how to perform skull-stripping in CT and MR data
+*'''[https://www.youtube.com/watch?v=0at15gjk-Ns Video tutorial: Femur and pelvis segmentation from CT]''' shows how to use the Segment Editor module for segmenting pelvis and femur from CT volumes.
 **Author: Sonia Pujol, PhD, Andras Lasso, PhD, Ron Kikinis, MD
 **Audience: Users interested in brain segmentation
@@ Line 232: / Line 244: @@
 :Author: Dominik Meier, Ph.D.
 :Audience:  users interested learning/applying Slicer image registration technology
-| align="right" |[[Image:RegLib_table.png|250px|link=http://wiki.slicer.org/wiki/Documentation/{{documentation/version}}/Registration/RegistrationLibrary]]
+| align="right" |[[Image:RegLib_table.png|250px|link=https://www.slicer.org/wiki/Documentation/{{documentation/version}}/Registration/RegistrationLibrary]]
 |}
 =Slicer Extensions=
@@ Line 249: / Line 260: @@
 | align="right" |
 [[Image:Slicer4DTI Tutorial.png|right|250px|]]
 |}
@@ Line 333: / Line 343: @@
 [[File:SlicerWinterProjectWeek2017-FiberBundleVolumeMeasurements.png | 200px]].
 |}
 ==Slicer4 Lung CT Analyzer==
@@ Line 422: / Line 431: @@
 | style="width:25%" |[[Image:DICOM2.png|right|250px|]] [https://www.youtube.com/watch?v=nzWf4xHy1BM& How to export CT and segmentation data to DICOM- Author: Andras Lasso, Csaba Pinter]
 | style="width:25%" |[[Image:LocalThresholdEffect.png|right|250px|]] [https://www.youtube.com/watch?time_continue=26&v=cevlMLyhfK8&feature=emb_logo Local Threshold Effect - Author: Kyle Sunderland]
-| style="width:25%" |[[Image:VMTKCenterlines.png|right|250px|]] [https://www.youtube.com/watch?v=yi07mjr3JeU&feature=youtu.be SlicerVMTK centerline extraction (Slicer 4.11)- Author: Andras Lasso]
+| style="width:25%" |[[Image:VMTKCenterlines.png|right|250px|]] [https://www.youtube.com/watch?v=yi07mjr3JeU SlicerVMTK centerline extraction (Slicer 4.11)- Author: Andras Lasso]
 | style="width:25%" |[[Image:MONAILabel.png|right|250px|]] [https://www.youtube.com/watch?v=PmD8umlcpF4 MONAI Label(Slicer 4.11)- Author: Andres Diaz-Pinto]
 |}
 Additional [http://www.youtube.com/results?search_query=3d+slicer&sm=3 non-curated videos-based demonstrations using 3D Slicer are accessible on YouTube].
@@ Line 453: / Line 461: @@
 <br>
 ==International resources==
 International resources in Chinese and in German are made available by the Slicer community.
 ==Resources in Chinese==
 {| width="100%"
+|
 A 3D Slicer community on WeChat in China offers many tutorials and clinical examples in Chinese.  Note that the images are of interest to non-Chinese speakers and Google Translate does a reasonable job of translating some of the text. The tutorials below are examples of Slicer tutorials in Chinese.
 *[https://mp.weixin.qq.com/s?__biz=MzI3MDY4ODA5Mw==&mid=2247486116&idx=1&sn=772e9d431ac32cbb73d08cf0e6bc219a&chksm=eacc0096ddbb89805d93ac4be181d1a35058031bac673d7a91b3b44dccee2bfd1d8461397635#rd Getting started 大脑前动脉远端动脉瘤手术夹闭治疗]
@@ Line 502: / Line 510: @@
 *Audience: Users interested in segmentation
 | align="right" |[[File:FastGrowCutLogo.png|200px]]
 |}

@@ Line 59: / Line 59: @@
+|
 *Slicer 5.0
-**The [https://spujol.github.io/SlicerVisualizationTutorial/ Slicer 5.0 Basics of data loading and visualization tutorial] shows how to load and visualize DICOM images and 3D models in 3D Slicer.
+**The [https://spujol.github.io/SlicerVisualizationTutorial/ Slicer 5.0 Basics of data loading and visualization tutorial] shows how to load and visualize DICOM images and 3D models in 3D Slicer. [https://docs.google.com/presentation/d/12Lbq-QBCxP2p9FkF3_YM5Ng7pItfspMG0FP_20wQglA/edit?usp=sharing French version]
 **Author: Sonia Pujol, Ph.D.
 **Modules: DICOM, Volume Rendering, Models

@@ Line 420: / Line 420: @@
 |}
 {| border="1" cellpadding="5" width="1200px" |
-| style="width:33%" |[[Image:DICOM2.png|right|250px|]] [https://www.youtube.com/watch?v=nzWf4xHy1BM& How to export CT and segmentation data to DICOM- Author: Andras Lasso, Csaba Pinter]
+| style="width:25%" |[[Image:DICOM2.png|right|250px|]] [https://www.youtube.com/watch?v=nzWf4xHy1BM& How to export CT and segmentation data to DICOM- Author: Andras Lasso, Csaba Pinter]
-| style="width:33%" |[[Image:LocalThresholdEffect.png|right|250px|]] [https://www.youtube.com/watch?time_continue=26&v=cevlMLyhfK8&feature=emb_logo Local Threshold Effect - Author: Kyle Sunderland]
+| style="width:25%" |[[Image:LocalThresholdEffect.png|right|250px|]] [https://www.youtube.com/watch?time_continue=26&v=cevlMLyhfK8&feature=emb_logo Local Threshold Effect - Author: Kyle Sunderland]
-| style="width:33%" |[[Image:VMTKCenterlines.png|right|250px|]] [https://www.youtube.com/watch?v=yi07mjr3JeU&feature=youtu.be SlicerVMTK centerline extraction (Slicer 4.11)- Author: Andras Lasso]
+| style="width:25%" |[[Image:VMTKCenterlines.png|right|250px|]] [https://www.youtube.com/watch?v=yi07mjr3JeU&feature=youtu.be SlicerVMTK centerline extraction (Slicer 4.11)- Author: Andras Lasso]
 |}

@@ Line 1: / Line 1: @@
-<noinclude>{{documentation/versioncheck}}</noinclude>
+<noinclude>{{documentation/versioncheck}}
 =Introduction: Slicer {{documentation/version}} Tutorials=
@@ Line 8: / Line 9: @@
-*Some of these tutorials are based on older releases of 3D Slicer and are being upgraded to Slicer4.10. The concepts are still useful but some interface elements and features may be different in updated versions.
+*Some of these tutorials are based on older releases of 3D Slicer and are being upgraded to Slicer5.0. The concepts are still useful but some interface elements and features may be different in updated versions.
 __TOC__
@@ Line 88: / Line 89: @@
 *Modules: DICOM, Volumes
 *Based on: 3D Slicer version 5.0/4.11
-*The [https://spujol.github.io/SlicerDICOMTutorial/ 3D Slicer DICOM Tutorial Data ] contains a torso-CT and a breast MRI.
+*The [https://spujol.github.io/SlicerDICOMTutorial/ 3D Slicer DICOM Tutorial Data] contains a torso-CT and a breast MRI.
 | align="right" |
 [[Image:SlicerAndDICOM.png|right|250px|]]
@@ Line 339: / Line 340: @@
 *The [https://github.com/rbumm/SlicerLungCTAnalyzer LungCTAnalyzer tutorial] and the [https://www.youtube.com/watch?v=fpLxm7uAvZQ LungCTAnalyzer video-based demo] show how to visualize and quantify infiltration, emphysema and collapsed lung areas in CT datasets acquired on COVID-19 patients.
 *Authors: Rudolph Bumm, MD, Andras Lasso, PhD.
 *Audience: End-users
 *Modules: LungCTSegmenter, LungCTAnalyzer
 *Based on: 3D Slicer version 5.0 (4.11)
 | align="right" |

@@ Line 190: / Line 190: @@
+|
 *Based on: 3D Slicer version 4.10
-*The [https://spujol.github.io/ImagePhenotypingTutorial/Image Phenotyping tutorial] is an introduction to brain tumor segmentation and image phenotyping using the Slicer Radiomics extension.
+*The [https://spujol.github.io/ImagePhenotypingTutorial/ Image Phenotyping tutorial] is an introduction to brain tumor segmentation and image phenotyping using the Slicer Radiomics extension.
 *Authors: Sonia Pujol, Ph.D.
 *Audience: Clinical researchers
@@ Line 197: / Line 197: @@
 |}
 =Registration=

@@ Line 184: / Line 184: @@
 | align="right" |[[Image:SkullStripping.png|280px]]
 |}
 =Registration=
@@ Line 221: / Line 235: @@
 |}
 =Slicer Extensions=

@@ Line 118: / Line 118: @@
 =Tutorials for software developers=
 ==PerkLab's Slicer bootcamp training materials==
@@ Line 135: / Line 132: @@
 |}
-For additional Python scripts examples, please visit the [[Documentation/{{documentation/version}}/ScriptRepository|Script Repository page]]
+==Slicer4 Programming Tutorial==
 {| width="100%"
@@ Line 148: / Line 144: @@
 [[Image:SlicerProgrammingTutorial.png|right|250px|]]
 |}
 ==Developing and contributing extensions for 3D Slicer==