UpdateBot: Nightly -> 4.10

2018-10-19T00:45:46Z

Nightly -> 4.10

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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
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'''''Extensions:''''' [https://www.slicer.org/wiki/Documentation/Nightly/Extensions/BoneTextureExtesion BoneTextureExtesion] 
'''''Author:''''' Jean-Baptise Vimort, Kitware Inc. 
'''''Contributors:''''' Beatriz Paniagua (Kitware Inc), Lucia Cevidanes (University of Michigan - School of Dentistry), Erika Benavides (University of Michigan - School of Dentistry), Antônio Carlos de Oliveira Ruellas (University of Michigan - School of Dentistry) 
'''''Contact:''''' Jean-Baptiste Vimort, <email>jb.vimort@kitware.com</email> 
'''''Acknowledgments:''''' This work was supported by the National Institute of Health (NIH) National Institute for Dental and Craniofacial Research (NIDCR) grant R21DE025306 (Textural Biomarkers of Arthritis for the Subchondral Bone in the Temporomandibular Joint), NIDCR grant R01DE024450 (Quantification of 3D bony Changes in
Temporomandibular Joint Osteoarthritis) and National Institute of Biomedical Imaging and Bioengineering NIBIB) grant R01EB021391 (Shape Analysis Toolbox for Medical Image Computing Projects). 
'''''License:''''' [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]

<gallery>
Image:Kitware-logo.png|Kitware Inc.
Image:UofM-logo.png|University of Michigan
</gallery>

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This module provide a simple and dynamic user interface that allows:
* to use [[Documentation/{{documentation/version}}/Modules/ComputeGLCMFeatureMaps|ComputeGLCMFeatureMaps]], [[Documentation/{{documentation/version}}/Modules/ComputeGLCMFeatures|ComputeGLCMFeatures]], [[Documentation/{{documentation/version}}/Modules/ComputeGLRLMFeatureMaps|ComputeGLRLMFeatureMaps]] and [[Documentation/{{documentation/version}}/Modules/ComputeGLRLMFeatures|ComputeGLRLMFeatures]]. 
* to easily modify the parameters and choose the wanted outputs in order to fit to each case studied in the best way possible.
* to observe each outputs generated to be able to verify their consistency and hypothetically re-run the algorithm with a different parameter set.


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{|
|[[Image:BoneTexture-Interface.png|thumb|500px]]
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{{documentation/{{documentation/version}}/module-section|Use Cases}}

==Inputs==

{|
|[[Image:BoneTexture-Input.png|thumb|500px|BoneTexture Inputs]]
| This section allows the user to specify:
* The input scan: it's interesting to notice that the computation time will improve if the useful data is taking as much space as possible in the input scan (a preliminary cropping step might be considered in order to erase the useless data on the boundaries)
* An input mask: the mask is optional, therefore it will reduce the computation time of the algorithms
|}

==Parameters==

{|
|[[Image:BoneTexture-Parameter.png|thumb|500px|BoneTexture parameters]]
|This section allows the user to choose:
* The Type of features wanted: Run length features or co-occurrence features
* All the parameters necessary to run each algorithms
* The type of outputs wanted: texture features or texture maps
|}

{|
|[[Image:BoneTexture-GLCMParam.png|thumb|500px|GLCM Parameters]]
|[[Image:BoneTexture-GLRLMParam.png|thumb|500px| GLRLM Parameters]]
|[[Image:BoneTexture-BMParam.png|thumb|500px| BM Parameters]]
|}

==Result display==

===Texture features===

{|
|[[Image:BoneTexture-FeatureValues.png|thumb|500px|Texture features result]]
|The texture features computed over the whole input scan will be displayed in this table.
|}

===Texture Maps===

{|
|[[Image:BoneTexture-DisplayColormaps.png|thumb|500px|Texture map choice]]
|This section allows the user to easily observe the texture maps generated. 
The first drop down menu allow to choose the texture map set (usually GLCM or CLRLM).
|}

{|
|[[Image:BoneTexture-FeatureSelection.png|thumb|500px|Feature choice]]
|The second drop down menu allow to choose the feature displayed in the 3D view of Slicer.
|}


{{documentation/{{documentation/version}}/module-section|Additional Information}}

* [http://www.insight-journal.org/browse/publication/985 InsightJournal article]
* [https://github.com/InsightSoftwareC BoneTextureExtension Tutorial]


{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
The source code is available on [https://github.com/Kitware/BoneTextureExtension/tree/master/BoneTexture github]


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[[Category:Documentation/{{documentation/version}}/Modules/ShapeAnalysis]]

Documentation/4.10/Modules/BoneTexture - Revision history

UpdateBot: Nightly -> 4.10