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<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}

[[File:ERCIcon.png|300px|European Research Council]]
[[File:Kapteyn logo1.png|500px|Kapteyn Astronomical Institute]]

{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
Authors:<br>
<b>Davide Punzo</b> (Kapteyn Astronomical Institute, University of Groningen) <br>
<b>Thijs van der Hulst</b> (Kapteyn Astronomical Institute, University of Groningen) <br>
<b>Jos Roerdink</b> (Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen) <br> <br>

Contributors: <br>
<b>Jean-Christophe Fillion-Robin</b> (Kitware) <br>
<b>Steve Pieper</b> (Isomics) <br>
<b>Andras Lasso</b> (PerkLab, Queen's) <br> <br>

Acknowledgements: <br>
This work was supported by the European Research Council under the European Union's Seventh Framework Programme (FP/2007-2013)/ERC Grant Agreement nr. 291-531.<br> <br>

Contacts:
* Davide Punzo, <email>punzodavide@hotmail.it</email>; <email>D.Punzo@astro.rug.nl</email>
* Thijs van der Hulst, <email>J.M.van.der.Hulst@astro.rug.nl</email>
* Jos Roerdink <email>j.b.t.m.roerdink@rug.nl</email>
[http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerAstro Back to SlicerAstro home]
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
The {{documentation/modulename}} can read/write FITS file (astronomical data format) and handle the color function and display of Astro Volumes. <br><br>



{{documentation/{{documentation/version}}/module-section|Panels and their use}}
<br>
<h4>Handling the loading and writing of FITS files</h4><br>
[[File:AstroLoading.png|750 px]]

<br>

<h4> MRML nodes that store the data-cube and the FITS keywords in the 3DSlicer object-tree (Data module) </h4><br>

[[File:AstroData.png|500 px]]

<br>
<h4>The control of the display coordinates</h4><br>
[[File:AstroVolumeInformation.png|1000 px]]

<br>
<h4> The display of Beam information in the XY view </h4><br>

[[File:AstroHistogram.png|1000 px]]

<br>
<h4>The control of the 2D color transfer function</h4><br>
[[File:Astro2DColorFunction1.png|1000 px]]
[[File:Astro2DColorFunction2.png|1000 px]]
[[File:Astro2DColorFunction3.png|1000 px]]
[[File:Astro2DColorFunction4.png|1000 px]]

<br>
<h4> The display of the Astronomical World Coordinate (WCS) and Data Probing for 2D views </h4><br>

[[File:Astro2DAxes1.png|1000 px]]

<br>
<h4> The display of Beam information in the XY view </h4><br>

[[File:AstroBeam.png|1000 px]]

<br>
<h4>The control of the 3D color transfer function</h4><br>
[[File:Astro3DColorFunction.png|1000 px]]

<br>
<h4>Tools to convert mask from FITS files (e.g., generated by SoFiA) into segmentations objects and viceversa</h4><br>
[[File:AstroMask2.png|1000 px]]
[[File:AstroMask6.png|1000 px]]



{{documentation/{{documentation/version}}/module-section|Astro segmentation editor effect}}


<br>
<h4>AstroCloudLasso Effect</h4><br>
The AstroCloudLasso segmentation editor effect is a tool to interactively perform a 3D selection.
This 3D selection (the segmentation) can be used either for:

1. changing an imported mask generated by automated algorithms (e.g., source finders);<br>
2. providing an input mask to a variety of tools in SlicerAstro (e.g., MomentMaps module and Modeling module).<br>

[[File:AstroMask3.png|1000 px]]
[[File:AstroMask4.png|1000 px]]


{{documentation/{{documentation/version}}/module-section|References}}
<pre>
@ARTICLE{2017A&C....19...45P,
author = {{Punzo}, D. and {van der Hulst}, J.~M. and {Roerdink}, J.~B.~T.~M. and
{Fillion-Robin}, J.~C. and {Yu}, L.},
title = "{SlicerAstro: A 3-D interactive visual analytics tool for HI data}",
journal = {Astronomy and Computing},
archivePrefix = "arXiv",
eprint = {1703.06651},
primaryClass = "astro-ph.IM",
keywords = {Radio lines: galaxies, Scientific visualization, Visual analytics, Agile software development, Object oriented development, Empirical software validation},
year = 2017,
month = apr,
volume = 19,
pages = {45-59},
doi = {10.1016/j.ascom.2017.03.004},
}
</pre>




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 * Thijs van der Hulst, <email>J.M.van.der.Hulst@astro.rug.nl</email>
 * Jos Roerdink <email>j.b.t.m.roerdink@rug.nl</email>
-[http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerAstro Back to SlicerAstro home]
+[http://www.slicer.org/wiki/Documentation/Nightly/Extensions/SlicerAstro Back to SlicerAstro home]
 {{documentation/{{documentation/version}}/module-introduction-end}}

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