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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
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[[Image:DMRI 3D SLICER-icon.png]]
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Extension: [[Documentation/{{documentation/version}}/Extensions/SlicerDMRI|SlicerDMRI]]<br>
Acknowledgments:
This work is supported in part by the National Cancer Institute and the National Institute of Biomedical Imaging and Bioengineering of the National Institutes of Health through the following grants:
* NIH NCI ITCR U01CA199459 (Open Source Diffusion MRI Technology For Brain Cancer Research)
* NIH P41EB015898 (National Center for Image-Guided Therapy)
* NIH P41EB015902 (Neuroimaging Analysis Center)
* National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
Major Contributors: Lauren J. O'Donnell ({{collaborator|name|spl}}), Isaiah Norton (Brigham and Women's Hospital), Raul San Jose Estepar (Brigham and Women's Hospital), Carl-Fredrik Westin (Brigham and Women's Hospital), Steve Pieper, Alex Yarmarkovich<br>

License: [http://www.slicer.org/pages/LicenseText Slicer License]

Website: [http://slicerdmri.github.io SlicerDMRI]
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|Image:SlicerDMRIScreenshot.jpg|SlicerDMRI
|Image:Logo-splnew.jpg|Surgical Planning Laboratory
|Image:NAC-logo.png|NAC
|Image:NCIGT-Logo.jpeg|NCIGT
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{{documentation/{{documentation/version}}/extension-section|Extension Description}}

SlicerDMRI extension hosts various modules to facilitate
* processing and management of diffusion MRI image data
* utilizing diffusion MRI tractography for neuroscience studies and for planning image-guided interventions
* quantitative analysis of diffusion MRI data

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* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Brain Masking]]: Creates a brain mask from a diffusion weighted image volume
* [[Documentation/Nightly/Modules/DWIToDTIEstimation|Diffusion Tensor Estimation]]: Estimates the diffusion tensor model from diffusion weighted images.
* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Maps]]: Computes scalar measures from a diffusion tensor dataset.
* [[Documentation/Nightly/Modules/DWIConverter|DWIConverter]]: Converts diffusion weighted MR images in dicom series into Nrrd format for analysis in Slicer.
* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]: Implements DT image resampling through the use of itk Transforms.
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar/Vector/DWI Volume]]: Implements image and vector-image resampling through the use of its Transforms.
* [[Documentation/Nightly/Modules/TractographyDICOMLoad|Tractography DICOM Load]]: Utility for DICOM TrackSet conversion to Slicer-style VTK tractography.
* [[Documentation/Nightly/Modules/TractographyDICOMSave|Tractography DICOM Save]]: Utility for conversion of Slicer-style VTK tractography to DICOM TrackSet.
* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]: Allows the user to modify the display of diffusion tractography.
* [[Documentation/Nightly/Modules/FiberTractMeasurements|Tractography Measurements]]: Computes whole-fiber scalar measurements from a directory of VTK fiber bundle files
* [[Documentation/Nightly/Modules/FiberBundleLabelSelect|Tractography ROI Selection]]: Allows a user to select tracts passing or not passing through single or multiple labels.
* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography ROI Seeding]]: Seeds tractography from a Diffusion Tensor Image (DTI) within a region defined by a label map.
* [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|Tractography Seeding]]: Allows interactive seeding of DTI fiber tracts starting from a list of fiducial points or vertices of a model, or a label map volume.
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Tractography to Mask Image]]: Allows a user to set the specified label value in the label map at every vertex in each of the fibers in a bundle.
* [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]]: Traces fibers in a DWI Volume using the multiple tensor unscented Kalman Filter methodology.
* DWI to Full Brain Tractography:

{{documentation/{{documentation/version}}/extension-section|References}}
[1] O’Donnell LJ, Westin CF. An introduction to diffusion tensor image analysis. Neurosurgery clinics of North America. 2011 Apr 30;22(2):185-96.


{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
* SlicerSlicerDMRI organization page on github: https://github.com/SlicerDMRI


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[[Category:Documentation/{{documentation/version}}/Modules/Diffusion]]

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UpdateBot: Nightly -> 4.10