https://www.slicer.org/w/index.php?action=history&feed=atom&title=Documentation%2F4.10%2FExtensions%2FSkeletalRepresentationDocumentation/4.10/Extensions/SkeletalRepresentation - Revision history2026-06-30T12:04:47ZRevision history for this page on the wikiMediaWiki 1.33.0https://www.slicer.org/w/index.php?title=Documentation/4.10/Extensions/SkeletalRepresentation&diff=59943&oldid=prevUpdateBot: Nightly -> 4.102018-10-19T00:44:51Z<p>Nightly -> 4.10</p>
<p><b>New page</b></p><div>== Introduction and Acknowledgements ==<br />
'''Acknowledgements:''' This work is part of Slicer Shape Analysis Toolbox ([http://salt.slicer.org/ SlicerSALT]), funded by NIH NIBIB R01EB021391 (Shape Analysis Toolbox for Medical Image Computing Projects), as well as the [https://www.slicer.org/ Slicer community].<br /><br />
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'''Author:''' Zhiyuan Liu<br /><br />
'''Contributors:''' Pablo Hernandez-Cerdan, Jean-Christophe Fillion-Robin, Beatriz Paniagua, Jared Vicory, Junpyo Hong, Stephen M. Pizer<br /><br />
'''Contact:''' Zhiyuan Liu, zhiy at cs dot unc dot edu<br />
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== Extension Description ==<br />
This extension is an open source tool to establish, optimize and visualize [http://midag.cs.unc.edu/pubs/papers/xavier_book_2019.pdf skeletal representation] (abbreviated as s-rep) of 3D objects in biomedical images. The main features of this extension include:<br /><br />
* Establish an s-rep by mean curvature flow of an object boundary<br /><br />
* Refine an s-rep to fit an object boundary<br />
<gallery><br />
SkeletalRepresentation.png|Icon of the extension<br />
</gallery><br />
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== Modules ==<br />
* Skeletal Representation Initializer<br />
* Skeletal Representation Optimizer<br />
* Skeletal Representation Visualizer<br />
== Use Cases ==<br />
Sample data can be found [https://github.com/KitwareMedical/SlicerSkeletalRepresentation/blob/master/SkeletalRepresentationVisualizer/Testing/test_data/hippo.m3d here].<br /><br />
<gallery><br />
Hippo_mesh.png|The surface mesh of hippocampus <br />
New_srep.png|Visualize the s-rep of the hippocampus<br />
</gallery><br />
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== Tutorials ==<br />
<gallery><br />
Srep_tutorial.png|Download tutorial<br />
</gallery><br />
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== Similar Extensions ==<br />
NA<br />
== References ==<br />
* Stephen M. Pizer, Junpyo Hong, Jared Vicory, J. S. Marron, and others, "[http://midag.cs.unc.edu/pubs/papers/xavier_book_2019.pdf Object Shape Representation via Skeletal Models (s-reps) and Statistical Analysis]" in Riemannian Geometric Statistics in Medical Image Analysis, no. (Xavier Pennec, Stefan Sommer, and Tom Fletcher, eds.), 2019.</div>UpdateBot