Documentation/4.10/Extensions/PET-IndiC - Revision history

Chribaue at 14:30, 22 July 2022

2022-07-22T14:30:58Z

Chribaue at 19:11, 21 May 2020

2020-05-21T19:11:31Z

Grundlett: Text replacement - "(.)@(.)<\/email>" to "$1{{@}}$2"

2019-11-27T05:45:54Z

Text replacement - "<email>(.*)@(.*)<\/email>" to "$1{{@}}$2"

UpdateBot: Nightly -> 4.10

2018-10-19T00:44:38Z

Nightly -> 4.10

New page

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[[Image:PET-IndiC.png|128px|center|]]

{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
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Acknowledgments:
The UIowa [http://imaging.cancer.gov/programsandresources/specializedinitiatives/qin QIN] PET-IndiC Extension was funded in part by [http://imaging.cancer.gov/programsandresources/specializedinitiatives/qin/iowa Quantitative Imaging to Assess Response in Cancer Therapy Trials] NIH grant U01-CA140206 and [http://qiicr.org Quantitative Image Informatics for Cancer Research (QIICR)] NIH grant U24 CA180918. <br>
Authors: Ethan Ulrich (University of Iowa)<br>
Contributors: Markus van Tol (University of Iowa), Christian Bauer (University of Iowa), Andrey Fedorov ({{collaborator|name|spl}}), Reinhard Beichel (University of Iowa), John Buatti (University of Iowa)<br>
Contact: <email>qin@iibi.uiowa.edu</email><br>

License: [http://www.slicer.org/pages/LicenseText Slicer License]

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{{documentation/{{documentation/version}}/extension-section|Extension Description}}
The PET-IndiC Extension allows for fast segmentation of regions of interest and calculation of quantitative indices.

{{#ev:youtube|https://www.youtube.com/watch?v=_JXxFSa_vzc}}

==USAGE==
PET-IndiC is an extension of the main Editor module in Slicer
{|
|[[Image:PET-IndiC_Screenshot1.png|thumb|800px|PET-IndiC Interface]]
|}
After selecting an input image, a label image is automatically assigned. Window/Level presets are available for PET SUV images. For import of DICOM PET images as SUV images, see the [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM Extension]].
{|
|[[Image:PET-IndiC_Screenshot2.png|thumb|375px|FDG PET (Inverted Grey)]]
|[[Image:PET-IndiC_Screenshot3.png|thumb|375px|FDG PET (Rainbow)]]
|}
Segment the image using the Editor tools. The PET-IndiC Extension is meant to be coupled with the [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PET-SEG Extension]] editor effect.
{|
|[[Image:PET-IndiC_Screenshot4.png|thumb|600px|Editor Effect options]]
|}
Quantitative indices are calculated automatically whenever a new label is created or the current label is modified. Several indices are available for calculation. The output appears as a table that can be copied and pasted into a spreadsheet.
{|
|[[Image:PET-IndiC_Screenshot5.png|thumb|700px|Quantitative indices options and output.]]
|}

{{documentation/{{documentation/version}}/extension-section|Modules}}
*[[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]
*[[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]


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* Source code: https://github.com/QIICR/PET-IndiC


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 The PET-IndiC Extension allows for fast segmentation of regions of interest and calculation of quantitative indices.
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+{{#ev:youtube|https://www.youtube.com/watch?v=9CIzot8n3hQ}}
 ==USAGE==

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 *[[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]
 *[[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]
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 Authors: Ethan Ulrich (University of Iowa)<br>
 Contributors: Markus van Tol (University of Iowa), Christian Bauer (University of Iowa), Andrey Fedorov ({{collaborator|name|spl}}), Reinhard Beichel (University of Iowa), John Buatti (University of Iowa)<br>
-Contact: <email>qin@iibi.uiowa.edu</email><br>
+Contact: qin{{@}}iibi.uiowa.edu<br>
 License: [http://www.slicer.org/pages/LicenseText Slicer License]

Documentation/4.10/Extensions/PET-IndiC - Revision history

Chribaue at 14:30, 22 July 2022

Chribaue at 19:11, 21 May 2020

Grundlett: Text replacement - "(.*)@(.*)<\/email>" to "$1{{@}}$2"

UpdateBot: Nightly -> 4.10

Grundlett: Text replacement - "(.)@(.)<\/email>" to "$1{{@}}$2"