Documentation/4.1/Modules/MultiVolumeExplorer - Revision history

Grundlett: Text replacement - "http://wiki.slicer.org/slicerWiki/images/" to "http://www.slicer.org/w/img_auth.php/"

2019-11-27T12:31:07Z

Text replacement - "http://wiki.slicer.org/slicerWiki/images/" to "http://www.slicer.org/w/img_auth.php/"

2013-06-14T07:21:36Z

Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

2012-05-03T21:14:10Z

2012-05-01T17:36:18Z

Unresolved issues

2012-05-01T17:33:52Z

2012-05-01T17:31:41Z

2012-05-01T17:30:56Z

2012-05-01T17:29:47Z

2012-05-01T17:28:07Z

2012-05-01T17:24:23Z

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 * [http://www.youtube.com/watch?v=7zFWRzC31o4 Screencast tutorial] (note that the module is located in '''Modules -> Work in progress -> MultiVolume Support''', not in Modules -> MultiVolume Support, as shown in the video)
 * Sample datasets are available:
-** [http://wiki.slicer.org/slicerWiki/images/5/56/Case1_DCE.tgz anonymized prostate DCE MRI DICOM series]
+** [http://www.slicer.org/w/img_auth.php/5/56/Case1_DCE.tgz anonymized prostate DCE MRI DICOM series]
 ** [[File:Cardiac_ECGg_CT.tgz]] (ECG-gated contrast-enhanced cardiac CT) (use "User-defined non-DICOM" parameter option to load it into MultiVolumeImporter). Short [[media:BeatingHeart.mov|movie]]

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 * '''Plotting''': there are two modes of plotting that are supported by the module:
 ** ''Interactive plotting'': this mode of plotting is enabled by default and is facilitated by the chart area located in the ''Plotting'' panel. When enabled, the chart will display the intensity values at the spatial location defined by the current position of the mouse pointer. This mode can be disable from the ''Plotting'' GUI panel.
-** ''Static plotting'': This mode of plotting is enabled by the Charts infrastructure of Slicer, which is exposed in any of the ''Quantitive layouts''. To use this mode, follow these steps:
+** ''Static plotting'': This mode of plotting is enabled by the [[Documentation/4.1/SlicerApplication/MainApplicationGUI#Chart_Viewers | Charts]] infrastructure of Slicer, which is exposed in any of the ''Quantitive layouts''. To use this mode, follow these steps:
 **# Extract a representative frame from your multivolume dataset, as discussed above.
 **# Use the [[Documentation/4.1/Modules/Editor|Editor]] module to create labels for the regions of interest.

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 * improve error reporting!
 * look into flickering issue of vtkChart
-* improve documentation
+* improve documentation -- DONE
 ==Features to be implemented==

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 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Information for Developers}}
-{{documentation/{{documentation/version}}/module-developerinfo}}
+This module is an external Slicer module. The source code is available on Github here: https://github.com/fedorov/MultiVolumeExplorer
 ==Known issues that won't be resolved==
 * [http://www.na-mic.org/Bug/view.php?id=1841 bug 1841]: multivolumes that contain less than 7 frames will not be saved correctly and the scene containing such objects will not be loaded correctly by Slicer (limitation of the NRRD IO for DWI)

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 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Related Modules}}
-Before multivolume data can be viewed/explored, it has to be loaded using MultVolumeImporter module.
+Before multivolume data can be viewed/explored, it has to be loaded using [[Documentation/4.1/Modules/MultiVolumeImporter|MultVolumeImporter]] module.
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 |}
-[[Image:Slicer4-MultiVolumeExplorer_static_plotting.png|thumb|600px|Illustration of the static plotting from the explorer module. Note the label overlay in slice viewer with the ROIs corresponding to the femoral artery and an area in the prostate peripheral zone. The same label is selected in the ''Plotting'' panel of the module. The corresponding colors are assigned to the plots in the Chart viewer in the layout.]]
+[[Image:Slicer4-MultiVolumeExplorer_static_plotting.png|thumb|600px|Illustration of the static plotting from the explorer module. Note the label overlay in slice viewer with the ROIs corresponding to the femoral artery and an area in the prostate peripheral zone (blue arrow). The label corresponds to the segmentation done for the extracted volume of the 17th frame of the multivolume (green arrow). The same label is selected in the ''Plotting'' panel of the module. The corresponding colors are assigned to the plots in the Chart viewer in the layout (yellow arrow).]]
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