Documentation/4.0/SlicerApplication/LookupTables - Revision history

UpdateBot: Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

2013-06-14T07:33:12Z

Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

Kikinis: /* Overview */

2012-02-20T16:37:06Z

Overview

Finetjul: /* Slicer ColorPicker */

2012-02-18T22:42:03Z

Slicer ColorPicker

Finetjul: /* LUTs */

2012-02-18T22:39:09Z

LUTs

Finetjul: Add lut links from Slicer3:LUTs_and_Ontologies

2012-02-18T18:30:29Z

Add lut links from Slicer3:LUTs_and_Ontologies

Kikinis: /* Custom LUTs */

2012-02-18T17:21:06Z

Custom LUTs

Kikinis: /* Custom LUTs */

2012-02-18T17:18:50Z

Custom LUTs

Kikinis: /* Custom LUTs */

2012-02-18T17:17:25Z

Custom LUTs

Kikinis: /* LUTs for Charting */

2012-02-18T17:10:37Z

LUTs for Charting

Kikinis: /* Custom LUTs */

2012-02-18T17:03:45Z

Custom LUTs

← Older revision		Revision as of 07:33, 14 June 2013
Line 1:		Line 1:
		+	<noinclude>{{documentation/versioncheck}}</noinclude>
	<!-- ---------------------------- -->		<!-- ---------------------------- -->
	{{documentation/{{documentation/version}}/slicerapplication-header}}		{{documentation/{{documentation/version}}/slicerapplication-header}}

@@ Line 5: / Line 5: @@
 =Overview=
-Slicer offers a variety of predefined lookup tables (LUT).
+Slicer offers a variety of predefined lookup tables (LUT). Volumes can be associated with a LUT in the volumes module. Also, [[Documentation/4.0/Modules/Colors|see the colors module]].
 =LUTs=

@@ Line 27: / Line 27: @@
 Please see the [[Slicer4:2012_GenericChartColors|separate page]]
 =Slicer ColorPicker=
 [[Image:SlicerColorPicker-2012-02-18.png|300px|right|thumb|The slicer colorpicker allows to select colors from a label map and to assign them to objects such as surface models or streamlines]]

@@ Line 8: / Line 8: @@
 =LUTs=
-<gallery>
+<gallery widths=200px>
-file:DiscreteLUTs-2012-02-18.png|Discrete Luts
+file:DiscreteLUTs-2012-02-18.png|''Discrete LUTs''
-file:Shade-LUTs-2012-02-18.png|Shade Luts
+file:Shade-LUTs-2012-02-18.png|''Shade LUTs''
-file:Tint-LUTs-2012-02-18.png|Tint Luts
+file:Tint-LUTs-2012-02-18.png|''Tint LUTs''
-file:Freesurfer-LUTs-2012-02-18.png|Freesurfer Luts
+file:Freesurfer-LUTs-2012-02-18.png|''Freesurfer LUTs''<br>&nbsp;&nbsp;&nbsp;&nbsp;[[Slicer3:Freesurfer_labels|Freesurfer labels]]
-file:PET-LUTs-2012-02-18.png|PET Luts
+file:PET-LUTs-2012-02-18.png|''PET LUTs''
-file:CartilageMRI-LUTs-2012-02-18.png|Cartilage MRI Luts
+file:CartilageMRI-LUTs-2012-02-18.png|''Cartilage MRI LUTs''
-file:Labelmap-LUTs-2012-02-18.png|Labelmap Luts
+file:Labelmap-LUTs-2012-02-18.png|''Labelmap LUTs''<br>&nbsp;&nbsp;&nbsp;&nbsp;[[Slicer3:2010_Brain_Labels|2010 Brain Labels]]: Label colors for brain segmentation<br>&nbsp;&nbsp;&nbsp;&nbsp;[[Slicer3:2010_Label_Colors|2010 Label Colors]]: Colors for a generic labelmap
-file:GenericLabel-LUTs-2012-02-18.png|Generic Labelmap Luts
+file:GenericLabel-LUTs-2012-02-18.png|''Generic Labelmap LUTs''<br>&nbsp;&nbsp;&nbsp;&nbsp;[[Slicer3:2010_GenericAnatomyColors|GenericAnatomyColors]]: default LUT<br>&nbsp;&nbsp;&nbsp;&nbsp;[[Slicer3:GenericColors.txt|GenericColors]]
 </gallery>
 ===Custom LUTs===
 *[[Slicer3:Mori-Atlas_labels|Mori-Atlas labels]]
 *[[Slicer3:Lauras_labels|Lauras labels]]
+*[[CCA:Atlases:MRI_Brain_Atlas_2010:ColorFile|2010 Brain Atlas]]:Good example of the wiki-based labelpage format, including multiple tables.
 ===LUTs for Charting===

@@ Line 18: / Line 18: @@
 file:GenericLabel-LUTs-2012-02-18.png|Generic Labelmap Luts
 </gallery>
 =Slicer ColorPicker=
 [[Image:SlicerColorPicker-2012-02-18.png|300px|right|thumb|The slicer colorpicker allows to select colors from a label map and to assign them to objects such as surface models or streamlines]]
 =Custom LUTs=

@@ Line 26: / Line 26: @@
 =Custom LUTs=
-It is relatively easy to create custom LUTs by creating a table with the colors on the wiki. See the example below.
+It is relatively easy to create custom LUTs by creating a table with the colors on the wiki. This allows to select specific names and colors when segmenting. See below for an example.
@@ Line 65: / Line 65: @@
 * Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
 * [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format.

@@ Line 35: / Line 35: @@
 ! notes
 |-
-| 0
+|0
-| background
+|background
-| rgba(0,0,0,0.0)
+|style="background:rgb(0,0,0);color:white"|rgba(0,0,0,0)
-| The background label is included here because it isn't an anatomical structure.
 |}

← Older revision		Revision as of 17:17, 18 February 2012
Line 26:		Line 26:

	=Custom LUTs=		=Custom LUTs=
−	It is relatively easy to create custom LUTs.	+	It is relatively easy to create custom LUTs by creating a table with the colors on the wiki. See the example below.
		+
		+
		+	{\| class="wikitable sortable labelpage labelpagetable" border="1"
		+	! integer_label
		+	! text_label
		+	! color
		+	! notes
		+	\|-
		+	\| 0
		+	\| background
		+	\| rgba(0,0,0,0.0)
		+	\| The background label is included here because it isn't an anatomical structure.
		+	\|}
		+
		+
		+	* Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
		+	* [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format.